miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18254 3' -54.5 NC_004681.1 + 73106 0.69 0.630439
Target:  5'- gGGGCGUacugcGCAGAGcaCGCGCCAAUc -3'
miRNA:   3'- -UCCGCGauuu-CGUCUUc-GCGCGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 70871 0.72 0.420699
Target:  5'- cGGaGCUGAGGCGG-AGCGCuaucaaacucaaGCCAGCu -3'
miRNA:   3'- uCCgCGAUUUCGUCuUCGCG------------CGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 69209 0.67 0.749713
Target:  5'- aGGGCGCg--GGC-GAGGCGgCGCUucACa -3'
miRNA:   3'- -UCCGCGauuUCGuCUUCGC-GCGGu-UG- -5'
18254 3' -54.5 NC_004681.1 + 68674 0.71 0.479901
Target:  5'- uGGCccGCUGucGCuccAGGCGUGCCAGCa -3'
miRNA:   3'- uCCG--CGAUuuCGuc-UUCGCGCGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 64184 0.76 0.258744
Target:  5'- -aGCGgUGAAGCAGAGuGCGCGCUAGg -3'
miRNA:   3'- ucCGCgAUUUCGUCUU-CGCGCGGUUg -5'
18254 3' -54.5 NC_004681.1 + 62957 0.67 0.728662
Target:  5'- cGGCGgUGGuGGCGGcGGCGgCGCgAGCa -3'
miRNA:   3'- uCCGCgAUU-UCGUCuUCGC-GCGgUUG- -5'
18254 3' -54.5 NC_004681.1 + 62556 0.66 0.790276
Target:  5'- cGGUGUcauccaggagaUGGAacGcCGGGAGCGCGCCGAg -3'
miRNA:   3'- uCCGCG-----------AUUU--C-GUCUUCGCGCGGUUg -5'
18254 3' -54.5 NC_004681.1 + 62525 0.68 0.674538
Target:  5'- uGGGCgGCggagAGGGCGGugucGGCGC-CCAGCc -3'
miRNA:   3'- -UCCG-CGa---UUUCGUCu---UCGCGcGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 61868 0.67 0.739242
Target:  5'- cGGCGUgAAgacuacucGGUGGAGGCGUGCCu-- -3'
miRNA:   3'- uCCGCGaUU--------UCGUCUUCGCGCGGuug -5'
18254 3' -54.5 NC_004681.1 + 61171 0.69 0.630439
Target:  5'- cGGgGUc--GGCGGucAGCGUGCCGACg -3'
miRNA:   3'- uCCgCGauuUCGUCu-UCGCGCGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 60931 0.66 0.760063
Target:  5'- cGGGCaGCggaaccacAGUGGAGGCGUGCCu-- -3'
miRNA:   3'- -UCCG-CGauu-----UCGUCUUCGCGCGGuug -5'
18254 3' -54.5 NC_004681.1 + 60139 0.69 0.608357
Target:  5'- cGGUGCcAGGuGCGGGAGC-CGCCGAa -3'
miRNA:   3'- uCCGCGaUUU-CGUCUUCGcGCGGUUg -5'
18254 3' -54.5 NC_004681.1 + 59651 0.68 0.674538
Target:  5'- cGGGCGUccGAAGCGGuGGGCuuccaGCCAACa -3'
miRNA:   3'- -UCCGCGa-UUUCGUC-UUCGcg---CGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 58481 0.67 0.737135
Target:  5'- uGGGCGCcgcgugaaccgcGAGGCAGuccAGGCGCuGCgCGACa -3'
miRNA:   3'- -UCCGCGa-----------UUUCGUC---UUCGCG-CG-GUUG- -5'
18254 3' -54.5 NC_004681.1 + 58073 0.71 0.50053
Target:  5'- uGGCGC----GUGGAAGCGCGCUgcAACg -3'
miRNA:   3'- uCCGCGauuuCGUCUUCGCGCGG--UUG- -5'
18254 3' -54.5 NC_004681.1 + 56333 0.73 0.374878
Target:  5'- aAGGCGUccAAGguGcAGCGCGCCuuCa -3'
miRNA:   3'- -UCCGCGauUUCguCuUCGCGCGGuuG- -5'
18254 3' -54.5 NC_004681.1 + 54130 0.67 0.707224
Target:  5'- cGGGCGCgc-GGCGGAcccucGUGgaaGCCAGCa -3'
miRNA:   3'- -UCCGCGauuUCGUCUu----CGCg--CGGUUG- -5'
18254 3' -54.5 NC_004681.1 + 54046 0.66 0.770281
Target:  5'- -cGCGCgcccgAGAGCccuAGAAGCGCGgCAc- -3'
miRNA:   3'- ucCGCGa----UUUCG---UCUUCGCGCgGUug -5'
18254 3' -54.5 NC_004681.1 + 53642 0.66 0.789291
Target:  5'- cGGCGCccuGGuCGGugucgucauccacAAGCGCGCCGGa -3'
miRNA:   3'- uCCGCGauuUC-GUC-------------UUCGCGCGGUUg -5'
18254 3' -54.5 NC_004681.1 + 51643 0.67 0.707224
Target:  5'- uGGCcaGCUuGGGCGauGAGCGCGUCGACc -3'
miRNA:   3'- uCCG--CGAuUUCGUc-UUCGCGCGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.