miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18255 3' -61.8 NC_004681.1 + 16249 0.71 0.228245
Target:  5'- gAUGAGCGACGGGauG-GCcgCCAGCgCCg -3'
miRNA:   3'- -UACUCGCUGUCCggCgCGa-GGUCG-GG- -5'
18255 3' -61.8 NC_004681.1 + 30955 0.66 0.436253
Target:  5'- -cGGGuCGGCGGGCgGCGUgCC-GUCCu -3'
miRNA:   3'- uaCUC-GCUGUCCGgCGCGaGGuCGGG- -5'
18255 3' -61.8 NC_004681.1 + 23956 0.66 0.436253
Target:  5'- cGUGucCGuCAGGCCGCugaUCCAGCUg -3'
miRNA:   3'- -UACucGCuGUCCGGCGcg-AGGUCGGg -5'
18255 3' -61.8 NC_004681.1 + 22827 0.67 0.374974
Target:  5'- -cGAGUGGC-GGCCGUGCcgguguucugggUCUGuGCCCa -3'
miRNA:   3'- uaCUCGCUGuCCGGCGCG------------AGGU-CGGG- -5'
18255 3' -61.8 NC_004681.1 + 48225 0.66 0.445471
Target:  5'- -aGGGCG-CGGGCCaucUGCUUCucgauGCCCa -3'
miRNA:   3'- uaCUCGCuGUCCGGc--GCGAGGu----CGGG- -5'
18255 3' -61.8 NC_004681.1 + 6392 0.66 0.427147
Target:  5'- -cGAccGCGGCAGGCCcauGauCUCgCGGCCCu -3'
miRNA:   3'- uaCU--CGCUGUCCGG---CgcGAG-GUCGGG- -5'
18255 3' -61.8 NC_004681.1 + 53429 0.74 0.136656
Target:  5'- cGUGAGCG-CAGGUacuuguaGUGCUCCAGgaCCCg -3'
miRNA:   3'- -UACUCGCuGUCCGg------CGCGAGGUC--GGG- -5'
18255 3' -61.8 NC_004681.1 + 5808 1.09 0.000287
Target:  5'- cAUGAGCGACAGGCCGCGCUCCAGCCCg -3'
miRNA:   3'- -UACUCGCUGUCCGGCGCGAGGUCGGG- -5'
18255 3' -61.8 NC_004681.1 + 16161 0.66 0.445471
Target:  5'- -aGGGCGGCAGuCUGCGUUgCGGCg- -3'
miRNA:   3'- uaCUCGCUGUCcGGCGCGAgGUCGgg -5'
18255 3' -61.8 NC_004681.1 + 20042 0.66 0.439927
Target:  5'- -gGA-CGGguGGCCGCGCUaccucugcuacggacCCGGCaCCu -3'
miRNA:   3'- uaCUcGCUguCCGGCGCGA---------------GGUCG-GG- -5'
18255 3' -61.8 NC_004681.1 + 17820 0.7 0.251891
Target:  5'- ---cGCGGC-GGCCGCGCaaggcaCCGGCCUc -3'
miRNA:   3'- uacuCGCUGuCCGGCGCGa-----GGUCGGG- -5'
18255 3' -61.8 NC_004681.1 + 40383 0.68 0.350555
Target:  5'- -aGAGCGGCAccgccagcguGGCCgGUGuCUCCA-CCCa -3'
miRNA:   3'- uaCUCGCUGU----------CCGG-CGC-GAGGUcGGG- -5'
18255 3' -61.8 NC_004681.1 + 16407 0.67 0.366708
Target:  5'- -aGGGUGAcCAGGCCauGCGCUaCGGCUg -3'
miRNA:   3'- uaCUCGCU-GUCCGG--CGCGAgGUCGGg -5'
18255 3' -61.8 NC_004681.1 + 31391 0.66 0.464225
Target:  5'- -aGGGCuACGGGgCGCGCgacggaCuGCCCg -3'
miRNA:   3'- uaCUCGcUGUCCgGCGCGag----GuCGGG- -5'
18255 3' -61.8 NC_004681.1 + 55915 0.67 0.374974
Target:  5'- ---cGCG-CAGGUCGUGCgCguGCCCg -3'
miRNA:   3'- uacuCGCuGUCCGGCGCGaGguCGGG- -5'
18255 3' -61.8 NC_004681.1 + 66936 0.67 0.383366
Target:  5'- uGUG-GCGGCccuGGuGCCGCGCgCCgAGCUCg -3'
miRNA:   3'- -UACuCGCUG---UC-CGGCGCGaGG-UCGGG- -5'
18255 3' -61.8 NC_004681.1 + 40616 0.66 0.44547
Target:  5'- -aGGGCGACGuugaugguGGCCGCcCUcucCCAGCUa -3'
miRNA:   3'- uaCUCGCUGU--------CCGGCGcGA---GGUCGGg -5'
18255 3' -61.8 NC_004681.1 + 21096 0.66 0.408396
Target:  5'- gAUGAGCGACGGcaauCCGCuggacacGCUCaugacGCCCa -3'
miRNA:   3'- -UACUCGCUGUCc---GGCG-------CGAGgu---CGGG- -5'
18255 3' -61.8 NC_004681.1 + 24854 0.66 0.418154
Target:  5'- -cGGGCGGC-GGCCGCcaagGCUCCcuCaCCa -3'
miRNA:   3'- uaCUCGCUGuCCGGCG----CGAGGucG-GG- -5'
18255 3' -61.8 NC_004681.1 + 12948 0.66 0.423536
Target:  5'- cUGAGCGGCAacgucacgcugaccGGCCugacgucGCGCUcaCCGGCUa -3'
miRNA:   3'- uACUCGCUGU--------------CCGG-------CGCGA--GGUCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.