miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18255 3' -61.8 NC_004681.1 + 56019 0.68 0.350555
Target:  5'- -aGGGUGGCGGGCaCGCGCacgaCCuGCgCg -3'
miRNA:   3'- uaCUCGCUGUCCG-GCGCGa---GGuCGgG- -5'
18255 3' -61.8 NC_004681.1 + 62526 0.67 0.358568
Target:  5'- cUGGGCGGCGGagagggcgguGUCgGCGC-CCAGCCa -3'
miRNA:   3'- uACUCGCUGUC----------CGG-CGCGaGGUCGGg -5'
18255 3' -61.8 NC_004681.1 + 52965 0.67 0.366708
Target:  5'- -cGGGCacgcgGGCAGGCCGauggCCAGCCUu -3'
miRNA:   3'- uaCUCG-----CUGUCCGGCgcgaGGUCGGG- -5'
18255 3' -61.8 NC_004681.1 + 16407 0.67 0.366708
Target:  5'- -aGGGUGAcCAGGCCauGCGCUaCGGCUg -3'
miRNA:   3'- uaCUCGCU-GUCCGG--CGCGAgGUCGGg -5'
18255 3' -61.8 NC_004681.1 + 22827 0.67 0.374974
Target:  5'- -cGAGUGGC-GGCCGUGCcgguguucugggUCUGuGCCCa -3'
miRNA:   3'- uaCUCGCUGuCCGGCGCG------------AGGU-CGGG- -5'
18255 3' -61.8 NC_004681.1 + 55915 0.67 0.374974
Target:  5'- ---cGCG-CAGGUCGUGCgCguGCCCg -3'
miRNA:   3'- uacuCGCuGUCCGGCGCGaGguCGGG- -5'
18255 3' -61.8 NC_004681.1 + 34828 0.67 0.383366
Target:  5'- -gGGGCGGC-GGCCgaaGCGCgcgggaauUCCcaAGCCCg -3'
miRNA:   3'- uaCUCGCUGuCCGG---CGCG--------AGG--UCGGG- -5'
18255 3' -61.8 NC_004681.1 + 65327 0.67 0.383366
Target:  5'- -gGuGCGGCAGGCCGCuGUcggggucgauaUCCuGaCCCu -3'
miRNA:   3'- uaCuCGCUGUCCGGCG-CG-----------AGGuC-GGG- -5'
18255 3' -61.8 NC_004681.1 + 47116 0.67 0.383366
Target:  5'- cUGAGCGACgagaacgccgaGGGCCGCGCcgaaCuGCgCg -3'
miRNA:   3'- uACUCGCUG-----------UCCGGCGCGag--GuCGgG- -5'
18255 3' -61.8 NC_004681.1 + 66936 0.67 0.383366
Target:  5'- uGUG-GCGGCccuGGuGCCGCGCgCCgAGCUCg -3'
miRNA:   3'- -UACuCGCUG---UC-CGGCGCGaGG-UCGGG- -5'
18255 3' -61.8 NC_004681.1 + 32231 0.67 0.391882
Target:  5'- -cGcAGCGGCAgcgcGGCCuCGUgUCUAGCCCg -3'
miRNA:   3'- uaC-UCGCUGU----CCGGcGCG-AGGUCGGG- -5'
18255 3' -61.8 NC_004681.1 + 2543 0.67 0.400519
Target:  5'- aGUGGGCgGACGaugucGUCGCGCUgCCAGUCUu -3'
miRNA:   3'- -UACUCG-CUGUc----CGGCGCGA-GGUCGGG- -5'
18255 3' -61.8 NC_004681.1 + 9619 0.67 0.400519
Target:  5'- -gGGGCGguacaccaGCAGGCCgagGCGCUCUucGGCgCg -3'
miRNA:   3'- uaCUCGC--------UGUCCGG---CGCGAGG--UCGgG- -5'
18255 3' -61.8 NC_004681.1 + 21096 0.66 0.408396
Target:  5'- gAUGAGCGACGGcaauCCGCuggacacGCUCaugacGCCCa -3'
miRNA:   3'- -UACUCGCUGUCc---GGCG-------CGAGgu---CGGG- -5'
18255 3' -61.8 NC_004681.1 + 40004 0.66 0.409278
Target:  5'- cUGcGCaGGCuGGCCGCGCgcugggggucUCC-GCCCg -3'
miRNA:   3'- uACuCG-CUGuCCGGCGCG----------AGGuCGGG- -5'
18255 3' -61.8 NC_004681.1 + 24854 0.66 0.418154
Target:  5'- -cGGGCGGC-GGCCGCcaagGCUCCcuCaCCa -3'
miRNA:   3'- uaCUCGCUGuCCGGCG----CGAGGucG-GG- -5'
18255 3' -61.8 NC_004681.1 + 12948 0.66 0.423536
Target:  5'- cUGAGCGGCAacgucacgcugaccGGCCugacgucGCGCUcaCCGGCUa -3'
miRNA:   3'- uACUCGCUGU--------------CCGG-------CGCGA--GGUCGGg -5'
18255 3' -61.8 NC_004681.1 + 6392 0.66 0.427147
Target:  5'- -cGAccGCGGCAGGCCcauGauCUCgCGGCCCu -3'
miRNA:   3'- uaCU--CGCUGUCCGG---CgcGAG-GUCGGG- -5'
18255 3' -61.8 NC_004681.1 + 23956 0.66 0.436253
Target:  5'- cGUGucCGuCAGGCCGCugaUCCAGCUg -3'
miRNA:   3'- -UACucGCuGUCCGGCGcg-AGGUCGGg -5'
18255 3' -61.8 NC_004681.1 + 30955 0.66 0.436253
Target:  5'- -cGGGuCGGCGGGCgGCGUgCC-GUCCu -3'
miRNA:   3'- uaCUC-GCUGUCCGgCGCGaGGuCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.