miRNA display CGI


Results 1 - 20 of 46 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18255 3' -61.8 NC_004681.1 + 5808 1.09 0.000287
Target:  5'- cAUGAGCGACAGGCCGCGCUCCAGCCCg -3'
miRNA:   3'- -UACUCGCUGUCCGGCGCGAGGUCGGG- -5'
18255 3' -61.8 NC_004681.1 + 53429 0.74 0.136656
Target:  5'- cGUGAGCG-CAGGUacuuguaGUGCUCCAGgaCCCg -3'
miRNA:   3'- -UACUCGCuGUCCGg------CGCGAGGUC--GGG- -5'
18255 3' -61.8 NC_004681.1 + 16448 0.72 0.177262
Target:  5'- gGUGGucuCGGCGuGGUgGCGUUCCAGCCCc -3'
miRNA:   3'- -UACUc--GCUGU-CCGgCGCGAGGUCGGG- -5'
18255 3' -61.8 NC_004681.1 + 49666 0.72 0.196319
Target:  5'- -cGAGCGugaaGCAGGCuacugCGCGCUCUgcGGCCUc -3'
miRNA:   3'- uaCUCGC----UGUCCG-----GCGCGAGG--UCGGG- -5'
18255 3' -61.8 NC_004681.1 + 16249 0.71 0.228245
Target:  5'- gAUGAGCGACGGGauG-GCcgCCAGCgCCg -3'
miRNA:   3'- -UACUCGCUGUCCggCgCGa-GGUCG-GG- -5'
18255 3' -61.8 NC_004681.1 + 62319 0.7 0.233975
Target:  5'- -cGcGCGcACAGGUgGCGgUaCCAGCCCa -3'
miRNA:   3'- uaCuCGC-UGUCCGgCGCgA-GGUCGGG- -5'
18255 3' -61.8 NC_004681.1 + 17820 0.7 0.251891
Target:  5'- ---cGCGGC-GGCCGCGCaaggcaCCGGCCUc -3'
miRNA:   3'- uacuCGCUGuCCGGCGCGa-----GGUCGGG- -5'
18255 3' -61.8 NC_004681.1 + 41951 0.69 0.284242
Target:  5'- -cGuGgGACAGGUCG-GCUCCgcggagaucGGCCCg -3'
miRNA:   3'- uaCuCgCUGUCCGGCgCGAGG---------UCGGG- -5'
18255 3' -61.8 NC_004681.1 + 8748 0.69 0.298073
Target:  5'- --uGGUGACGGGCCGCGaggaaaUCaGGUCCg -3'
miRNA:   3'- uacUCGCUGUCCGGCGCg-----AGgUCGGG- -5'
18255 3' -61.8 NC_004681.1 + 17409 0.69 0.305183
Target:  5'- cGUGuAGCGucccGCGGGCaCGCGCgCCAGCa- -3'
miRNA:   3'- -UAC-UCGC----UGUCCG-GCGCGaGGUCGgg -5'
18255 3' -61.8 NC_004681.1 + 59807 0.69 0.305183
Target:  5'- -cGAGUguuGGCAGGCCGCaCUcCCAGCa- -3'
miRNA:   3'- uaCUCG---CUGUCCGGCGcGA-GGUCGgg -5'
18255 3' -61.8 NC_004681.1 + 3023 0.68 0.327287
Target:  5'- -cGcGUGGCGGuGCCGuCGC-CCAGCCa -3'
miRNA:   3'- uaCuCGCUGUC-CGGC-GCGaGGUCGGg -5'
18255 3' -61.8 NC_004681.1 + 35071 0.68 0.334914
Target:  5'- --cAGUGGCAGGCUcgguGCGCUCCuGaUCCa -3'
miRNA:   3'- uacUCGCUGUCCGG----CGCGAGGuC-GGG- -5'
18255 3' -61.8 NC_004681.1 + 11302 0.68 0.334914
Target:  5'- aAUG-GCGACAGGUagGCGCagaCCAGCUUc -3'
miRNA:   3'- -UACuCGCUGUCCGg-CGCGa--GGUCGGG- -5'
18255 3' -61.8 NC_004681.1 + 13335 0.68 0.34267
Target:  5'- uUGAcGCGGC-GGUCGCGCUUCuGCUUc -3'
miRNA:   3'- uACU-CGCUGuCCGGCGCGAGGuCGGG- -5'
18255 3' -61.8 NC_004681.1 + 852 0.68 0.34267
Target:  5'- cAUGGGCGGCAgGGCCGgGUa--GGCCg -3'
miRNA:   3'- -UACUCGCUGU-CCGGCgCGaggUCGGg -5'
18255 3' -61.8 NC_004681.1 + 25798 0.68 0.34267
Target:  5'- cUGcGGCGAugucacguaCAGGCCGaCGC-CUGGCCCc -3'
miRNA:   3'- uAC-UCGCU---------GUCCGGC-GCGaGGUCGGG- -5'
18255 3' -61.8 NC_004681.1 + 32337 0.68 0.34267
Target:  5'- -cGGGCuaGACacgAGGCCGCGCUgCCgcugcgauGGCCUg -3'
miRNA:   3'- uaCUCG--CUG---UCCGGCGCGA-GG--------UCGGG- -5'
18255 3' -61.8 NC_004681.1 + 40383 0.68 0.350555
Target:  5'- -aGAGCGGCAccgccagcguGGCCgGUGuCUCCA-CCCa -3'
miRNA:   3'- uaCUCGCUGU----------CCGG-CGC-GAGGUcGGG- -5'
18255 3' -61.8 NC_004681.1 + 56019 0.68 0.350555
Target:  5'- -aGGGUGGCGGGCaCGCGCacgaCCuGCgCg -3'
miRNA:   3'- uaCUCGCUGUCCG-GCGCGa---GGuCGgG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.