Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18255 | 3' | -61.8 | NC_004681.1 | + | 16448 | 0.72 | 0.177262 |
Target: 5'- gGUGGucuCGGCGuGGUgGCGUUCCAGCCCc -3' miRNA: 3'- -UACUc--GCUGU-CCGgCGCGAGGUCGGG- -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 31391 | 0.66 | 0.464225 |
Target: 5'- -aGGGCuACGGGgCGCGCgacggaCuGCCCg -3' miRNA: 3'- uaCUCGcUGUCCgGCGCGag----GuCGGG- -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 6344 | 0.66 | 0.44547 |
Target: 5'- ---cGCGAacu-CCGCGCUgCAGCCCu -3' miRNA: 3'- uacuCGCUguccGGCGCGAgGUCGGG- -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 40616 | 0.66 | 0.44547 |
Target: 5'- -aGGGCGACGuugaugguGGCCGCcCUcucCCAGCUa -3' miRNA: 3'- uaCUCGCUGU--------CCGGCGcGA---GGUCGGg -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 20042 | 0.66 | 0.439927 |
Target: 5'- -gGA-CGGguGGCCGCGCUaccucugcuacggacCCGGCaCCu -3' miRNA: 3'- uaCUcGCUguCCGGCGCGA---------------GGUCG-GG- -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 12948 | 0.66 | 0.423536 |
Target: 5'- cUGAGCGGCAacgucacgcugaccGGCCugacgucGCGCUcaCCGGCUa -3' miRNA: 3'- uACUCGCUGU--------------CCGG-------CGCGA--GGUCGGg -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 24854 | 0.66 | 0.418154 |
Target: 5'- -cGGGCGGC-GGCCGCcaagGCUCCcuCaCCa -3' miRNA: 3'- uaCUCGCUGuCCGGCG----CGAGGucG-GG- -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 21096 | 0.66 | 0.408396 |
Target: 5'- gAUGAGCGACGGcaauCCGCuggacacGCUCaugacGCCCa -3' miRNA: 3'- -UACUCGCUGUCc---GGCG-------CGAGgu---CGGG- -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 32231 | 0.67 | 0.391882 |
Target: 5'- -cGcAGCGGCAgcgcGGCCuCGUgUCUAGCCCg -3' miRNA: 3'- uaC-UCGCUGU----CCGGcGCG-AGGUCGGG- -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 66936 | 0.67 | 0.383366 |
Target: 5'- uGUG-GCGGCccuGGuGCCGCGCgCCgAGCUCg -3' miRNA: 3'- -UACuCGCUG---UC-CGGCGCGaGG-UCGGG- -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 49666 | 0.72 | 0.196319 |
Target: 5'- -cGAGCGugaaGCAGGCuacugCGCGCUCUgcGGCCUc -3' miRNA: 3'- uaCUCGC----UGUCCG-----GCGCGAGG--UCGGG- -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 17820 | 0.7 | 0.251891 |
Target: 5'- ---cGCGGC-GGCCGCGCaaggcaCCGGCCUc -3' miRNA: 3'- uacuCGCUGuCCGGCGCGa-----GGUCGGG- -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 35071 | 0.68 | 0.334914 |
Target: 5'- --cAGUGGCAGGCUcgguGCGCUCCuGaUCCa -3' miRNA: 3'- uacUCGCUGUCCGG----CGCGAGGuC-GGG- -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 40383 | 0.68 | 0.350555 |
Target: 5'- -aGAGCGGCAccgccagcguGGCCgGUGuCUCCA-CCCa -3' miRNA: 3'- uaCUCGCUGU----------CCGG-CGC-GAGGUcGGG- -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 16407 | 0.67 | 0.366708 |
Target: 5'- -aGGGUGAcCAGGCCauGCGCUaCGGCUg -3' miRNA: 3'- uaCUCGCU-GUCCGG--CGCGAgGUCGGg -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 55915 | 0.67 | 0.374974 |
Target: 5'- ---cGCG-CAGGUCGUGCgCguGCCCg -3' miRNA: 3'- uacuCGCuGUCCGGCGCGaGguCGGG- -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 47116 | 0.67 | 0.383366 |
Target: 5'- cUGAGCGACgagaacgccgaGGGCCGCGCcgaaCuGCgCg -3' miRNA: 3'- uACUCGCUG-----------UCCGGCGCGag--GuCGgG- -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 16161 | 0.66 | 0.445471 |
Target: 5'- -aGGGCGGCAGuCUGCGUUgCGGCg- -3' miRNA: 3'- uaCUCGCUGUCcGGCGCGAgGUCGgg -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 53429 | 0.74 | 0.136656 |
Target: 5'- cGUGAGCG-CAGGUacuuguaGUGCUCCAGgaCCCg -3' miRNA: 3'- -UACUCGCuGUCCGg------CGCGAGGUC--GGG- -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 16249 | 0.71 | 0.228245 |
Target: 5'- gAUGAGCGACGGGauG-GCcgCCAGCgCCg -3' miRNA: 3'- -UACUCGCUGUCCggCgCGa-GGUCG-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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