miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18255 3' -61.8 NC_004681.1 + 852 0.68 0.34267
Target:  5'- cAUGGGCGGCAgGGCCGgGUa--GGCCg -3'
miRNA:   3'- -UACUCGCUGU-CCGGCgCGaggUCGGg -5'
18255 3' -61.8 NC_004681.1 + 2543 0.67 0.400519
Target:  5'- aGUGGGCgGACGaugucGUCGCGCUgCCAGUCUu -3'
miRNA:   3'- -UACUCG-CUGUc----CGGCGCGA-GGUCGGG- -5'
18255 3' -61.8 NC_004681.1 + 3023 0.68 0.327287
Target:  5'- -cGcGUGGCGGuGCCGuCGC-CCAGCCa -3'
miRNA:   3'- uaCuCGCUGUC-CGGC-GCGaGGUCGGg -5'
18255 3' -61.8 NC_004681.1 + 5808 1.09 0.000287
Target:  5'- cAUGAGCGACAGGCCGCGCUCCAGCCCg -3'
miRNA:   3'- -UACUCGCUGUCCGGCGCGAGGUCGGG- -5'
18255 3' -61.8 NC_004681.1 + 6344 0.66 0.44547
Target:  5'- ---cGCGAacu-CCGCGCUgCAGCCCu -3'
miRNA:   3'- uacuCGCUguccGGCGCGAgGUCGGG- -5'
18255 3' -61.8 NC_004681.1 + 6392 0.66 0.427147
Target:  5'- -cGAccGCGGCAGGCCcauGauCUCgCGGCCCu -3'
miRNA:   3'- uaCU--CGCUGUCCGG---CgcGAG-GUCGGG- -5'
18255 3' -61.8 NC_004681.1 + 6521 0.68 0.350555
Target:  5'- -aGAcGCGACAggagugcuGGCCGguCGCUUCGGCgCCg -3'
miRNA:   3'- uaCU-CGCUGU--------CCGGC--GCGAGGUCG-GG- -5'
18255 3' -61.8 NC_004681.1 + 8748 0.69 0.298073
Target:  5'- --uGGUGACGGGCCGCGaggaaaUCaGGUCCg -3'
miRNA:   3'- uacUCGCUGUCCGGCGCg-----AGgUCGGG- -5'
18255 3' -61.8 NC_004681.1 + 9619 0.67 0.400519
Target:  5'- -gGGGCGguacaccaGCAGGCCgagGCGCUCUucGGCgCg -3'
miRNA:   3'- uaCUCGC--------UGUCCGG---CGCGAGG--UCGgG- -5'
18255 3' -61.8 NC_004681.1 + 11302 0.68 0.334914
Target:  5'- aAUG-GCGACAGGUagGCGCagaCCAGCUUc -3'
miRNA:   3'- -UACuCGCUGUCCGg-CGCGa--GGUCGGG- -5'
18255 3' -61.8 NC_004681.1 + 12948 0.66 0.423536
Target:  5'- cUGAGCGGCAacgucacgcugaccGGCCugacgucGCGCUcaCCGGCUa -3'
miRNA:   3'- uACUCGCUGU--------------CCGG-------CGCGA--GGUCGGg -5'
18255 3' -61.8 NC_004681.1 + 13335 0.68 0.34267
Target:  5'- uUGAcGCGGC-GGUCGCGCUUCuGCUUc -3'
miRNA:   3'- uACU-CGCUGuCCGGCGCGAGGuCGGG- -5'
18255 3' -61.8 NC_004681.1 + 16161 0.66 0.445471
Target:  5'- -aGGGCGGCAGuCUGCGUUgCGGCg- -3'
miRNA:   3'- uaCUCGCUGUCcGGCGCGAgGUCGgg -5'
18255 3' -61.8 NC_004681.1 + 16249 0.71 0.228245
Target:  5'- gAUGAGCGACGGGauG-GCcgCCAGCgCCg -3'
miRNA:   3'- -UACUCGCUGUCCggCgCGa-GGUCG-GG- -5'
18255 3' -61.8 NC_004681.1 + 16407 0.67 0.366708
Target:  5'- -aGGGUGAcCAGGCCauGCGCUaCGGCUg -3'
miRNA:   3'- uaCUCGCU-GUCCGG--CGCGAgGUCGGg -5'
18255 3' -61.8 NC_004681.1 + 16448 0.72 0.177262
Target:  5'- gGUGGucuCGGCGuGGUgGCGUUCCAGCCCc -3'
miRNA:   3'- -UACUc--GCUGU-CCGgCGCGAGGUCGGG- -5'
18255 3' -61.8 NC_004681.1 + 17409 0.69 0.305183
Target:  5'- cGUGuAGCGucccGCGGGCaCGCGCgCCAGCa- -3'
miRNA:   3'- -UAC-UCGC----UGUCCG-GCGCGaGGUCGgg -5'
18255 3' -61.8 NC_004681.1 + 17820 0.7 0.251891
Target:  5'- ---cGCGGC-GGCCGCGCaaggcaCCGGCCUc -3'
miRNA:   3'- uacuCGCUGuCCGGCGCGa-----GGUCGGG- -5'
18255 3' -61.8 NC_004681.1 + 20042 0.66 0.439927
Target:  5'- -gGA-CGGguGGCCGCGCUaccucugcuacggacCCGGCaCCu -3'
miRNA:   3'- uaCUcGCUguCCGGCGCGA---------------GGUCG-GG- -5'
18255 3' -61.8 NC_004681.1 + 21096 0.66 0.408396
Target:  5'- gAUGAGCGACGGcaauCCGCuggacacGCUCaugacGCCCa -3'
miRNA:   3'- -UACUCGCUGUCc---GGCG-------CGAGgu---CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.