Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18255 | 3' | -61.8 | NC_004681.1 | + | 66936 | 0.67 | 0.383366 |
Target: 5'- uGUG-GCGGCccuGGuGCCGCGCgCCgAGCUCg -3' miRNA: 3'- -UACuCGCUG---UC-CGGCGCGaGG-UCGGG- -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 65327 | 0.67 | 0.383366 |
Target: 5'- -gGuGCGGCAGGCCGCuGUcggggucgauaUCCuGaCCCu -3' miRNA: 3'- uaCuCGCUGUCCGGCG-CG-----------AGGuC-GGG- -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 62526 | 0.67 | 0.358568 |
Target: 5'- cUGGGCGGCGGagagggcgguGUCgGCGC-CCAGCCa -3' miRNA: 3'- uACUCGCUGUC----------CGG-CGCGaGGUCGGg -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 62319 | 0.7 | 0.233975 |
Target: 5'- -cGcGCGcACAGGUgGCGgUaCCAGCCCa -3' miRNA: 3'- uaCuCGC-UGUCCGgCGCgA-GGUCGGG- -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 59807 | 0.69 | 0.305183 |
Target: 5'- -cGAGUguuGGCAGGCCGCaCUcCCAGCa- -3' miRNA: 3'- uaCUCG---CUGUCCGGCGcGA-GGUCGgg -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 56019 | 0.68 | 0.350555 |
Target: 5'- -aGGGUGGCGGGCaCGCGCacgaCCuGCgCg -3' miRNA: 3'- uaCUCGCUGUCCG-GCGCGa---GGuCGgG- -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 55915 | 0.67 | 0.374974 |
Target: 5'- ---cGCG-CAGGUCGUGCgCguGCCCg -3' miRNA: 3'- uacuCGCuGUCCGGCGCGaGguCGGG- -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 53429 | 0.74 | 0.136656 |
Target: 5'- cGUGAGCG-CAGGUacuuguaGUGCUCCAGgaCCCg -3' miRNA: 3'- -UACUCGCuGUCCGg------CGCGAGGUC--GGG- -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 52965 | 0.67 | 0.366708 |
Target: 5'- -cGGGCacgcgGGCAGGCCGauggCCAGCCUu -3' miRNA: 3'- uaCUCG-----CUGUCCGGCgcgaGGUCGGG- -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 49666 | 0.72 | 0.196319 |
Target: 5'- -cGAGCGugaaGCAGGCuacugCGCGCUCUgcGGCCUc -3' miRNA: 3'- uaCUCGC----UGUCCG-----GCGCGAGG--UCGGG- -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 48225 | 0.66 | 0.445471 |
Target: 5'- -aGGGCG-CGGGCCaucUGCUUCucgauGCCCa -3' miRNA: 3'- uaCUCGCuGUCCGGc--GCGAGGu----CGGG- -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 47116 | 0.67 | 0.383366 |
Target: 5'- cUGAGCGACgagaacgccgaGGGCCGCGCcgaaCuGCgCg -3' miRNA: 3'- uACUCGCUG-----------UCCGGCGCGag--GuCGgG- -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 41951 | 0.69 | 0.284242 |
Target: 5'- -cGuGgGACAGGUCG-GCUCCgcggagaucGGCCCg -3' miRNA: 3'- uaCuCgCUGUCCGGCgCGAGG---------UCGGG- -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 40616 | 0.66 | 0.44547 |
Target: 5'- -aGGGCGACGuugaugguGGCCGCcCUcucCCAGCUa -3' miRNA: 3'- uaCUCGCUGU--------CCGGCGcGA---GGUCGGg -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 40383 | 0.68 | 0.350555 |
Target: 5'- -aGAGCGGCAccgccagcguGGCCgGUGuCUCCA-CCCa -3' miRNA: 3'- uaCUCGCUGU----------CCGG-CGC-GAGGUcGGG- -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 40004 | 0.66 | 0.409278 |
Target: 5'- cUGcGCaGGCuGGCCGCGCgcugggggucUCC-GCCCg -3' miRNA: 3'- uACuCG-CUGuCCGGCGCG----------AGGuCGGG- -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 35071 | 0.68 | 0.334914 |
Target: 5'- --cAGUGGCAGGCUcgguGCGCUCCuGaUCCa -3' miRNA: 3'- uacUCGCUGUCCGG----CGCGAGGuC-GGG- -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 34828 | 0.67 | 0.383366 |
Target: 5'- -gGGGCGGC-GGCCgaaGCGCgcgggaauUCCcaAGCCCg -3' miRNA: 3'- uaCUCGCUGuCCGG---CGCG--------AGG--UCGGG- -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 32337 | 0.68 | 0.34267 |
Target: 5'- -cGGGCuaGACacgAGGCCGCGCUgCCgcugcgauGGCCUg -3' miRNA: 3'- uaCUCG--CUG---UCCGGCGCGA-GG--------UCGGG- -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 32231 | 0.67 | 0.391882 |
Target: 5'- -cGcAGCGGCAgcgcGGCCuCGUgUCUAGCCCg -3' miRNA: 3'- uaC-UCGCUGU----CCGGcGCG-AGGUCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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