Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18258 | 5' | -58.6 | NC_004681.1 | + | 66976 | 0.68 | 0.529465 |
Target: 5'- aUCGGGGacagucACGUCGgccugcaCGCGCGCCUcaugucgcAGGCc -3' miRNA: 3'- cAGUCCU------UGCAGC-------GCGCGUGGG--------UCCG- -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 31497 | 0.68 | 0.520366 |
Target: 5'- aUCGGGcagucCGUCGCGCGC-CCCGuaGCc -3' miRNA: 3'- cAGUCCuu---GCAGCGCGCGuGGGUc-CG- -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 57790 | 0.68 | 0.516342 |
Target: 5'- uGUCGGGuuggccgaggauuGCGUCGaGCGCugCgCGGGUc -3' miRNA: 3'- -CAGUCCu------------UGCAGCgCGCGugG-GUCCG- -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 47076 | 0.68 | 0.510329 |
Target: 5'- -cCAGGAACGcCGcCGCGaACCCAaGGa -3' miRNA: 3'- caGUCCUUGCaGC-GCGCgUGGGU-CCg -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 36758 | 0.68 | 0.510329 |
Target: 5'- -cCAGGAuuACca-GCGCGuCugCCAGGCc -3' miRNA: 3'- caGUCCU--UGcagCGCGC-GugGGUCCG- -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 10007 | 0.68 | 0.510329 |
Target: 5'- uUCGGGGaagGCGUCG-GCcaGCugCUGGGCg -3' miRNA: 3'- cAGUCCU---UGCAGCgCG--CGugGGUCCG- -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 8388 | 0.68 | 0.500373 |
Target: 5'- cGUCcuuGGcGGCGUcCGCGC-CACCgAGGCu -3' miRNA: 3'- -CAGu--CC-UUGCA-GCGCGcGUGGgUCCG- -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 70523 | 0.68 | 0.480727 |
Target: 5'- ---cGGAGacgaugacagcUGUCGCGCGCGCgCguGGCa -3' miRNA: 3'- caguCCUU-----------GCAGCGCGCGUG-GguCCG- -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 14459 | 0.69 | 0.474907 |
Target: 5'- --aGGcGAACGcCGCGCGCGCCgccuccgccgagcaGGGCg -3' miRNA: 3'- cagUC-CUUGCaGCGCGCGUGGg-------------UCCG- -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 32165 | 0.69 | 0.471046 |
Target: 5'- cGUCaAGGAG-GUCGUGaacaCGCucaACCCGGGCa -3' miRNA: 3'- -CAG-UCCUUgCAGCGC----GCG---UGGGUCCG- -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 58778 | 0.69 | 0.461465 |
Target: 5'- uGUCAcgcgcacCGUCgagGCGCGCGCCCAGGa -3' miRNA: 3'- -CAGUccuu---GCAG---CGCGCGUGGGUCCg -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 19708 | 0.69 | 0.424211 |
Target: 5'- cGUCAucGAccACGcCGCaGCGCGCCCAGaGCu -3' miRNA: 3'- -CAGUc-CU--UGCaGCG-CGCGUGGGUC-CG- -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 2328 | 0.7 | 0.379427 |
Target: 5'- gGUCGGcGcccacuucuGCGUgcCGCGCGCcaacaagGCCCAGGCa -3' miRNA: 3'- -CAGUC-Cu--------UGCA--GCGCGCG-------UGGGUCCG- -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 59780 | 0.7 | 0.371859 |
Target: 5'- --aGGGGGCGUgGCgGCGCugCCAuguuGGCu -3' miRNA: 3'- cagUCCUUGCAgCG-CGCGugGGU----CCG- -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 6566 | 0.71 | 0.355413 |
Target: 5'- gGUCGGGGAUaGUCcCG-GCACCgAGGCg -3' miRNA: 3'- -CAGUCCUUG-CAGcGCgCGUGGgUCCG- -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 43476 | 0.71 | 0.331719 |
Target: 5'- cUCAGGGAC--UGUGCGCGCCgGGGa -3' miRNA: 3'- cAGUCCUUGcaGCGCGCGUGGgUCCg -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 65031 | 0.72 | 0.309206 |
Target: 5'- -cCAGGcGCGUCGCcaccuCGUGCuCCAGGCg -3' miRNA: 3'- caGUCCuUGCAGCGc----GCGUG-GGUCCG- -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 62559 | 0.72 | 0.301966 |
Target: 5'- uGUCAuccaggagauGGAACGcCGggaGCGCGCCgAGGCg -3' miRNA: 3'- -CAGU----------CCUUGCaGCg--CGCGUGGgUCCG- -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 44416 | 0.73 | 0.28103 |
Target: 5'- -aCAGGGuguGgGaCGCGCGCGCCCAGcGUg -3' miRNA: 3'- caGUCCU---UgCaGCGCGCGUGGGUC-CG- -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 61781 | 0.74 | 0.230854 |
Target: 5'- -cCAGGAgcucuACGUCGCcaaucaggaGCGCACCCAGaaGCu -3' miRNA: 3'- caGUCCU-----UGCAGCG---------CGCGUGGGUC--CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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