miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18258 5' -58.6 NC_004681.1 + 47485 0.67 0.592429
Target:  5'- -gCAGGAccGCGUCGCcgugGCGCGuuggCGGGCg -3'
miRNA:   3'- caGUCCU--UGCAGCG----CGCGUgg--GUCCG- -5'
18258 5' -58.6 NC_004681.1 + 7401 0.67 0.592429
Target:  5'- ---uGGAACGUCGCugGCGUGCagcucgucgCAGGCg -3'
miRNA:   3'- caguCCUUGCAGCG--CGCGUGg--------GUCCG- -5'
18258 5' -58.6 NC_004681.1 + 18383 0.66 0.602902
Target:  5'- aGUCgAGGAcuGCGgcCGUGcCGCGCCCGGaGUu -3'
miRNA:   3'- -CAG-UCCU--UGCa-GCGC-GCGUGGGUC-CG- -5'
18258 5' -58.6 NC_004681.1 + 66191 0.66 0.613399
Target:  5'- -gCAGGccguccuCGUUGCGCGCAUaCAGcGCg -3'
miRNA:   3'- caGUCCuu-----GCAGCGCGCGUGgGUC-CG- -5'
18258 5' -58.6 NC_004681.1 + 66011 0.66 0.613399
Target:  5'- cGUgAGGGACcUUGCG-GuCGCCCAGGa -3'
miRNA:   3'- -CAgUCCUUGcAGCGCgC-GUGGGUCCg -5'
18258 5' -58.6 NC_004681.1 + 61281 0.66 0.622859
Target:  5'- --gAGGAAUGUgGCGuCGCcgucgacccaguuGCCCuGGGCg -3'
miRNA:   3'- cagUCCUUGCAgCGC-GCG-------------UGGG-UCCG- -5'
18258 5' -58.6 NC_004681.1 + 61562 0.66 0.644945
Target:  5'- gGUCAgaacGGAACGUCGUcauCGC-CCCAcuuguuGGCg -3'
miRNA:   3'- -CAGU----CCUUGCAGCGc--GCGuGGGU------CCG- -5'
18258 5' -58.6 NC_004681.1 + 8921 0.66 0.65545
Target:  5'- cUCGGGuGCGUCGCGCagACCUucaucGGUg -3'
miRNA:   3'- cAGUCCuUGCAGCGCGcgUGGGu----CCG- -5'
18258 5' -58.6 NC_004681.1 + 52992 0.67 0.581986
Target:  5'- -gCAGGAuuuggauuUGUCGC-CGCGgCUCGGGCa -3'
miRNA:   3'- caGUCCUu-------GCAGCGcGCGU-GGGUCCG- -5'
18258 5' -58.6 NC_004681.1 + 46874 0.67 0.57158
Target:  5'- -gCGGGAugaccgugACGcCGUGCGCGCgCAGcGCc -3'
miRNA:   3'- caGUCCU--------UGCaGCGCGCGUGgGUC-CG- -5'
18258 5' -58.6 NC_004681.1 + 31497 0.68 0.520366
Target:  5'- aUCGGGcagucCGUCGCGCGC-CCCGuaGCc -3'
miRNA:   3'- cAGUCCuu---GCAGCGCGCGuGGGUc-CG- -5'
18258 5' -58.6 NC_004681.1 + 65031 0.72 0.309206
Target:  5'- -cCAGGcGCGUCGCcaccuCGUGCuCCAGGCg -3'
miRNA:   3'- caGUCCuUGCAGCGc----GCGUG-GGUCCG- -5'
18258 5' -58.6 NC_004681.1 + 43476 0.71 0.331719
Target:  5'- cUCAGGGAC--UGUGCGCGCCgGGGa -3'
miRNA:   3'- cAGUCCUUGcaGCGCGCGUGGgUCCg -5'
18258 5' -58.6 NC_004681.1 + 6566 0.71 0.355413
Target:  5'- gGUCGGGGAUaGUCcCG-GCACCgAGGCg -3'
miRNA:   3'- -CAGUCCUUG-CAGcGCgCGUGGgUCCG- -5'
18258 5' -58.6 NC_004681.1 + 59780 0.7 0.371859
Target:  5'- --aGGGGGCGUgGCgGCGCugCCAuguuGGCu -3'
miRNA:   3'- cagUCCUUGCAgCG-CGCGugGGU----CCG- -5'
18258 5' -58.6 NC_004681.1 + 19708 0.69 0.424211
Target:  5'- cGUCAucGAccACGcCGCaGCGCGCCCAGaGCu -3'
miRNA:   3'- -CAGUc-CU--UGCaGCG-CGCGUGGGUC-CG- -5'
18258 5' -58.6 NC_004681.1 + 70523 0.68 0.480727
Target:  5'- ---cGGAGacgaugacagcUGUCGCGCGCGCgCguGGCa -3'
miRNA:   3'- caguCCUU-----------GCAGCGCGCGUG-GguCCG- -5'
18258 5' -58.6 NC_004681.1 + 8388 0.68 0.500373
Target:  5'- cGUCcuuGGcGGCGUcCGCGC-CACCgAGGCu -3'
miRNA:   3'- -CAGu--CC-UUGCA-GCGCGcGUGGgUCCG- -5'
18258 5' -58.6 NC_004681.1 + 10007 0.68 0.510329
Target:  5'- uUCGGGGaagGCGUCG-GCcaGCugCUGGGCg -3'
miRNA:   3'- cAGUCCU---UGCAGCgCG--CGugGGUCCG- -5'
18258 5' -58.6 NC_004681.1 + 57790 0.68 0.516342
Target:  5'- uGUCGGGuuggccgaggauuGCGUCGaGCGCugCgCGGGUc -3'
miRNA:   3'- -CAGUCCu------------UGCAGCgCGCGugG-GUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.