Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18258 | 5' | -58.6 | NC_004681.1 | + | 33372 | 0.74 | 0.214079 |
Target: 5'- -cCGGccGCGUCGCGCGCGCCguguGGCa -3' miRNA: 3'- caGUCcuUGCAGCGCGCGUGGgu--CCG- -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 18192 | 0.66 | 0.65545 |
Target: 5'- gGUCcuGGAGCGccuccCG-GCGCACCCccGGGUg -3' miRNA: 3'- -CAGu-CCUUGCa----GCgCGCGUGGG--UCCG- -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 57207 | 0.66 | 0.634428 |
Target: 5'- --aGGGGGCGgaUCGC-CGC-CCCAGGa -3' miRNA: 3'- cagUCCUUGC--AGCGcGCGuGGGUCCg -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 70094 | 0.67 | 0.592429 |
Target: 5'- aUCAGaGAC--CGCGCGCACaCGGGCc -3' miRNA: 3'- cAGUCcUUGcaGCGCGCGUGgGUCCG- -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 43364 | 0.67 | 0.581986 |
Target: 5'- -cCGGGGACGUCauauccccgGCGCGCAcaguCCCugAGaGCa -3' miRNA: 3'- caGUCCUUGCAG---------CGCGCGU----GGG--UC-CG- -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 13556 | 0.67 | 0.580943 |
Target: 5'- aUCAuGGGcgaagagACGUaCGCGCGCuucaagGCCgCGGGCg -3' miRNA: 3'- cAGU-CCU-------UGCA-GCGCGCG------UGG-GUCCG- -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 38786 | 0.67 | 0.565359 |
Target: 5'- cUCAuGGAacuGCGggcCGCGCGCAaguccgccgagaccaUCCGGGCc -3' miRNA: 3'- cAGU-CCU---UGCa--GCGCGCGU---------------GGGUCCG- -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 61145 | 0.67 | 0.561221 |
Target: 5'- uGUCcaacGAACGcCGcCGCGaCGCCCAGGg -3' miRNA: 3'- -CAGuc--CUUGCaGC-GCGC-GUGGGUCCg -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 66976 | 0.68 | 0.529465 |
Target: 5'- aUCGGGGacagucACGUCGgccugcaCGCGCGCCUcaugucgcAGGCc -3' miRNA: 3'- cAGUCCU------UGCAGC-------GCGCGUGGG--------UCCG- -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 47076 | 0.68 | 0.510329 |
Target: 5'- -cCAGGAACGcCGcCGCGaACCCAaGGa -3' miRNA: 3'- caGUCCUUGCaGC-GCGCgUGGGU-CCg -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 36758 | 0.68 | 0.510329 |
Target: 5'- -cCAGGAuuACca-GCGCGuCugCCAGGCc -3' miRNA: 3'- caGUCCU--UGcagCGCGC-GugGGUCCG- -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 61781 | 0.74 | 0.230854 |
Target: 5'- -cCAGGAgcucuACGUCGCcaaucaggaGCGCACCCAGaaGCu -3' miRNA: 3'- caGUCCU-----UGCAGCG---------CGCGUGGGUC--CG- -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 44416 | 0.73 | 0.28103 |
Target: 5'- -aCAGGGuguGgGaCGCGCGCGCCCAGcGUg -3' miRNA: 3'- caGUCCU---UgCaGCGCGCGUGGGUC-CG- -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 62559 | 0.72 | 0.301966 |
Target: 5'- uGUCAuccaggagauGGAACGcCGggaGCGCGCCgAGGCg -3' miRNA: 3'- -CAGU----------CCUUGCaGCg--CGCGUGGgUCCG- -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 2328 | 0.7 | 0.379427 |
Target: 5'- gGUCGGcGcccacuucuGCGUgcCGCGCGCcaacaagGCCCAGGCa -3' miRNA: 3'- -CAGUC-Cu--------UGCA--GCGCGCG-------UGGGUCCG- -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 58778 | 0.69 | 0.461465 |
Target: 5'- uGUCAcgcgcacCGUCgagGCGCGCGCCCAGGa -3' miRNA: 3'- -CAGUccuu---GCAG---CGCGCGUGGGUCCg -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 32165 | 0.69 | 0.471046 |
Target: 5'- cGUCaAGGAG-GUCGUGaacaCGCucaACCCGGGCa -3' miRNA: 3'- -CAG-UCCUUgCAGCGC----GCG---UGGGUCCG- -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 14459 | 0.69 | 0.474907 |
Target: 5'- --aGGcGAACGcCGCGCGCGCCgccuccgccgagcaGGGCg -3' miRNA: 3'- cagUC-CUUGCaGCGCGCGUGGg-------------UCCG- -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 40245 | 0.66 | 0.65545 |
Target: 5'- aUCuGcGGCGUCGCGgccUGCcuguCCCGGGCg -3' miRNA: 3'- cAGuCcUUGCAGCGC---GCGu---GGGUCCG- -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 65031 | 0.72 | 0.309206 |
Target: 5'- -cCAGGcGCGUCGCcaccuCGUGCuCCAGGCg -3' miRNA: 3'- caGUCCuUGCAGCGc----GCGUG-GGUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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