Results 1 - 20 of 42 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18258 | 5' | -58.6 | NC_004681.1 | + | 6566 | 0.71 | 0.355413 |
Target: 5'- gGUCGGGGAUaGUCcCG-GCACCgAGGCg -3' miRNA: 3'- -CAGUCCUUG-CAGcGCgCGUGGgUCCG- -5' |
|||||||
18258 | 5' | -58.6 | NC_004681.1 | + | 18383 | 0.66 | 0.602902 |
Target: 5'- aGUCgAGGAcuGCGgcCGUGcCGCGCCCGGaGUu -3' miRNA: 3'- -CAG-UCCU--UGCa-GCGC-GCGUGGGUC-CG- -5' |
|||||||
18258 | 5' | -58.6 | NC_004681.1 | + | 66011 | 0.66 | 0.613399 |
Target: 5'- cGUgAGGGACcUUGCG-GuCGCCCAGGa -3' miRNA: 3'- -CAgUCCUUGcAGCGCgC-GUGGGUCCg -5' |
|||||||
18258 | 5' | -58.6 | NC_004681.1 | + | 40245 | 0.66 | 0.65545 |
Target: 5'- aUCuGcGGCGUCGCGgccUGCcuguCCCGGGCg -3' miRNA: 3'- cAGuCcUUGCAGCGC---GCGu---GGGUCCG- -5' |
|||||||
18258 | 5' | -58.6 | NC_004681.1 | + | 8388 | 0.68 | 0.500373 |
Target: 5'- cGUCcuuGGcGGCGUcCGCGC-CACCgAGGCu -3' miRNA: 3'- -CAGu--CC-UUGCA-GCGCGcGUGGgUCCG- -5' |
|||||||
18258 | 5' | -58.6 | NC_004681.1 | + | 10007 | 0.68 | 0.510329 |
Target: 5'- uUCGGGGaagGCGUCG-GCcaGCugCUGGGCg -3' miRNA: 3'- cAGUCCU---UGCAGCgCG--CGugGGUCCG- -5' |
|||||||
18258 | 5' | -58.6 | NC_004681.1 | + | 31497 | 0.68 | 0.520366 |
Target: 5'- aUCGGGcagucCGUCGCGCGC-CCCGuaGCc -3' miRNA: 3'- cAGUCCuu---GCAGCGCGCGuGGGUc-CG- -5' |
|||||||
18258 | 5' | -58.6 | NC_004681.1 | + | 7614 | 1.1 | 0.000611 |
Target: 5'- aGUCAGGAACGUCGCGCGCACCCAGGCc -3' miRNA: 3'- -CAGUCCUUGCAGCGCGCGUGGGUCCG- -5' |
|||||||
18258 | 5' | -58.6 | NC_004681.1 | + | 65031 | 0.72 | 0.309206 |
Target: 5'- -cCAGGcGCGUCGCcaccuCGUGCuCCAGGCg -3' miRNA: 3'- caGUCCuUGCAGCGc----GCGUG-GGUCCG- -5' |
|||||||
18258 | 5' | -58.6 | NC_004681.1 | + | 7401 | 0.67 | 0.592429 |
Target: 5'- ---uGGAACGUCGCugGCGUGCagcucgucgCAGGCg -3' miRNA: 3'- caguCCUUGCAGCG--CGCGUGg--------GUCCG- -5' |
|||||||
18258 | 5' | -58.6 | NC_004681.1 | + | 24685 | 0.67 | 0.581986 |
Target: 5'- gGUCgaaGGGAAUcuUCGagaugaugcCGCGCACCCAGuGCg -3' miRNA: 3'- -CAG---UCCUUGc-AGC---------GCGCGUGGGUC-CG- -5' |
|||||||
18258 | 5' | -58.6 | NC_004681.1 | + | 52992 | 0.67 | 0.581986 |
Target: 5'- -gCAGGAuuuggauuUGUCGC-CGCGgCUCGGGCa -3' miRNA: 3'- caGUCCUu-------GCAGCGcGCGU-GGGUCCG- -5' |
|||||||
18258 | 5' | -58.6 | NC_004681.1 | + | 59780 | 0.7 | 0.371859 |
Target: 5'- --aGGGGGCGUgGCgGCGCugCCAuguuGGCu -3' miRNA: 3'- cagUCCUUGCAgCG-CGCGugGGU----CCG- -5' |
|||||||
18258 | 5' | -58.6 | NC_004681.1 | + | 64251 | 0.67 | 0.592429 |
Target: 5'- -cCAuGGAaaGCGUUGUGCGC-CaCAGGCa -3' miRNA: 3'- caGU-CCU--UGCAGCGCGCGuGgGUCCG- -5' |
|||||||
18258 | 5' | -58.6 | NC_004681.1 | + | 19708 | 0.69 | 0.424211 |
Target: 5'- cGUCAucGAccACGcCGCaGCGCGCCCAGaGCu -3' miRNA: 3'- -CAGUc-CU--UGCaGCG-CGCGUGGGUC-CG- -5' |
|||||||
18258 | 5' | -58.6 | NC_004681.1 | + | 46874 | 0.67 | 0.57158 |
Target: 5'- -gCGGGAugaccgugACGcCGUGCGCGCgCAGcGCc -3' miRNA: 3'- caGUCCU--------UGCaGCGCGCGUGgGUC-CG- -5' |
|||||||
18258 | 5' | -58.6 | NC_004681.1 | + | 47485 | 0.67 | 0.592429 |
Target: 5'- -gCAGGAccGCGUCGCcgugGCGCGuuggCGGGCg -3' miRNA: 3'- caGUCCU--UGCAGCG----CGCGUgg--GUCCG- -5' |
|||||||
18258 | 5' | -58.6 | NC_004681.1 | + | 66191 | 0.66 | 0.613399 |
Target: 5'- -gCAGGccguccuCGUUGCGCGCAUaCAGcGCg -3' miRNA: 3'- caGUCCuu-----GCAGCGCGCGUGgGUC-CG- -5' |
|||||||
18258 | 5' | -58.6 | NC_004681.1 | + | 70523 | 0.68 | 0.480727 |
Target: 5'- ---cGGAGacgaugacagcUGUCGCGCGCGCgCguGGCa -3' miRNA: 3'- caguCCUU-----------GCAGCGCGCGUG-GguCCG- -5' |
|||||||
18258 | 5' | -58.6 | NC_004681.1 | + | 57790 | 0.68 | 0.516342 |
Target: 5'- uGUCGGGuuggccgaggauuGCGUCGaGCGCugCgCGGGUc -3' miRNA: 3'- -CAGUCCu------------UGCAGCgCGCGugG-GUCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home