miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18258 5' -58.6 NC_004681.1 + 2328 0.7 0.379427
Target:  5'- gGUCGGcGcccacuucuGCGUgcCGCGCGCcaacaagGCCCAGGCa -3'
miRNA:   3'- -CAGUC-Cu--------UGCA--GCGCGCG-------UGGGUCCG- -5'
18258 5' -58.6 NC_004681.1 + 6566 0.71 0.355413
Target:  5'- gGUCGGGGAUaGUCcCG-GCACCgAGGCg -3'
miRNA:   3'- -CAGUCCUUG-CAGcGCgCGUGGgUCCG- -5'
18258 5' -58.6 NC_004681.1 + 7401 0.67 0.592429
Target:  5'- ---uGGAACGUCGCugGCGUGCagcucgucgCAGGCg -3'
miRNA:   3'- caguCCUUGCAGCG--CGCGUGg--------GUCCG- -5'
18258 5' -58.6 NC_004681.1 + 7614 1.1 0.000611
Target:  5'- aGUCAGGAACGUCGCGCGCACCCAGGCc -3'
miRNA:   3'- -CAGUCCUUGCAGCGCGCGUGGGUCCG- -5'
18258 5' -58.6 NC_004681.1 + 8388 0.68 0.500373
Target:  5'- cGUCcuuGGcGGCGUcCGCGC-CACCgAGGCu -3'
miRNA:   3'- -CAGu--CC-UUGCA-GCGCGcGUGGgUCCG- -5'
18258 5' -58.6 NC_004681.1 + 8921 0.66 0.65545
Target:  5'- cUCGGGuGCGUCGCGCagACCUucaucGGUg -3'
miRNA:   3'- cAGUCCuUGCAGCGCGcgUGGGu----CCG- -5'
18258 5' -58.6 NC_004681.1 + 10007 0.68 0.510329
Target:  5'- uUCGGGGaagGCGUCG-GCcaGCugCUGGGCg -3'
miRNA:   3'- cAGUCCU---UGCAGCgCG--CGugGGUCCG- -5'
18258 5' -58.6 NC_004681.1 + 13556 0.67 0.580943
Target:  5'- aUCAuGGGcgaagagACGUaCGCGCGCuucaagGCCgCGGGCg -3'
miRNA:   3'- cAGU-CCU-------UGCA-GCGCGCG------UGG-GUCCG- -5'
18258 5' -58.6 NC_004681.1 + 14459 0.69 0.474907
Target:  5'- --aGGcGAACGcCGCGCGCGCCgccuccgccgagcaGGGCg -3'
miRNA:   3'- cagUC-CUUGCaGCGCGCGUGGg-------------UCCG- -5'
18258 5' -58.6 NC_004681.1 + 18192 0.66 0.65545
Target:  5'- gGUCcuGGAGCGccuccCG-GCGCACCCccGGGUg -3'
miRNA:   3'- -CAGu-CCUUGCa----GCgCGCGUGGG--UCCG- -5'
18258 5' -58.6 NC_004681.1 + 18383 0.66 0.602902
Target:  5'- aGUCgAGGAcuGCGgcCGUGcCGCGCCCGGaGUu -3'
miRNA:   3'- -CAG-UCCU--UGCa-GCGC-GCGUGGGUC-CG- -5'
18258 5' -58.6 NC_004681.1 + 19708 0.69 0.424211
Target:  5'- cGUCAucGAccACGcCGCaGCGCGCCCAGaGCu -3'
miRNA:   3'- -CAGUc-CU--UGCaGCG-CGCGUGGGUC-CG- -5'
18258 5' -58.6 NC_004681.1 + 24685 0.67 0.581986
Target:  5'- gGUCgaaGGGAAUcuUCGagaugaugcCGCGCACCCAGuGCg -3'
miRNA:   3'- -CAG---UCCUUGc-AGC---------GCGCGUGGGUC-CG- -5'
18258 5' -58.6 NC_004681.1 + 31497 0.68 0.520366
Target:  5'- aUCGGGcagucCGUCGCGCGC-CCCGuaGCc -3'
miRNA:   3'- cAGUCCuu---GCAGCGCGCGuGGGUc-CG- -5'
18258 5' -58.6 NC_004681.1 + 32165 0.69 0.471046
Target:  5'- cGUCaAGGAG-GUCGUGaacaCGCucaACCCGGGCa -3'
miRNA:   3'- -CAG-UCCUUgCAGCGC----GCG---UGGGUCCG- -5'
18258 5' -58.6 NC_004681.1 + 33372 0.74 0.214079
Target:  5'- -cCGGccGCGUCGCGCGCGCCguguGGCa -3'
miRNA:   3'- caGUCcuUGCAGCGCGCGUGGgu--CCG- -5'
18258 5' -58.6 NC_004681.1 + 36758 0.68 0.510329
Target:  5'- -cCAGGAuuACca-GCGCGuCugCCAGGCc -3'
miRNA:   3'- caGUCCU--UGcagCGCGC-GugGGUCCG- -5'
18258 5' -58.6 NC_004681.1 + 38786 0.67 0.565359
Target:  5'- cUCAuGGAacuGCGggcCGCGCGCAaguccgccgagaccaUCCGGGCc -3'
miRNA:   3'- cAGU-CCU---UGCa--GCGCGCGU---------------GGGUCCG- -5'
18258 5' -58.6 NC_004681.1 + 40245 0.66 0.65545
Target:  5'- aUCuGcGGCGUCGCGgccUGCcuguCCCGGGCg -3'
miRNA:   3'- cAGuCcUUGCAGCGC---GCGu---GGGUCCG- -5'
18258 5' -58.6 NC_004681.1 + 43364 0.67 0.581986
Target:  5'- -cCGGGGACGUCauauccccgGCGCGCAcaguCCCugAGaGCa -3'
miRNA:   3'- caGUCCUUGCAG---------CGCGCGU----GGG--UC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.