Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18258 | 5' | -58.6 | NC_004681.1 | + | 70523 | 0.68 | 0.480727 |
Target: 5'- ---cGGAGacgaugacagcUGUCGCGCGCGCgCguGGCa -3' miRNA: 3'- caguCCUU-----------GCAGCGCGCGUG-GguCCG- -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 70094 | 0.67 | 0.592429 |
Target: 5'- aUCAGaGAC--CGCGCGCACaCGGGCc -3' miRNA: 3'- cAGUCcUUGcaGCGCGCGUGgGUCCG- -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 66976 | 0.68 | 0.529465 |
Target: 5'- aUCGGGGacagucACGUCGgccugcaCGCGCGCCUcaugucgcAGGCc -3' miRNA: 3'- cAGUCCU------UGCAGC-------GCGCGUGGG--------UCCG- -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 66191 | 0.66 | 0.613399 |
Target: 5'- -gCAGGccguccuCGUUGCGCGCAUaCAGcGCg -3' miRNA: 3'- caGUCCuu-----GCAGCGCGCGUGgGUC-CG- -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 66011 | 0.66 | 0.613399 |
Target: 5'- cGUgAGGGACcUUGCG-GuCGCCCAGGa -3' miRNA: 3'- -CAgUCCUUGcAGCGCgC-GUGGGUCCg -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 65031 | 0.72 | 0.309206 |
Target: 5'- -cCAGGcGCGUCGCcaccuCGUGCuCCAGGCg -3' miRNA: 3'- caGUCCuUGCAGCGc----GCGUG-GGUCCG- -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 64251 | 0.67 | 0.592429 |
Target: 5'- -cCAuGGAaaGCGUUGUGCGC-CaCAGGCa -3' miRNA: 3'- caGU-CCU--UGCAGCGCGCGuGgGUCCG- -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 62559 | 0.72 | 0.301966 |
Target: 5'- uGUCAuccaggagauGGAACGcCGggaGCGCGCCgAGGCg -3' miRNA: 3'- -CAGU----------CCUUGCaGCg--CGCGUGGgUCCG- -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 61781 | 0.74 | 0.230854 |
Target: 5'- -cCAGGAgcucuACGUCGCcaaucaggaGCGCACCCAGaaGCu -3' miRNA: 3'- caGUCCU-----UGCAGCG---------CGCGUGGGUC--CG- -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 61562 | 0.66 | 0.644945 |
Target: 5'- gGUCAgaacGGAACGUCGUcauCGC-CCCAcuuguuGGCg -3' miRNA: 3'- -CAGU----CCUUGCAGCGc--GCGuGGGU------CCG- -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 61281 | 0.66 | 0.622859 |
Target: 5'- --gAGGAAUGUgGCGuCGCcgucgacccaguuGCCCuGGGCg -3' miRNA: 3'- cagUCCUUGCAgCGC-GCG-------------UGGG-UCCG- -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 61145 | 0.67 | 0.561221 |
Target: 5'- uGUCcaacGAACGcCGcCGCGaCGCCCAGGg -3' miRNA: 3'- -CAGuc--CUUGCaGC-GCGC-GUGGGUCCg -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 59780 | 0.7 | 0.371859 |
Target: 5'- --aGGGGGCGUgGCgGCGCugCCAuguuGGCu -3' miRNA: 3'- cagUCCUUGCAgCG-CGCGugGGU----CCG- -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 58778 | 0.69 | 0.461465 |
Target: 5'- uGUCAcgcgcacCGUCgagGCGCGCGCCCAGGa -3' miRNA: 3'- -CAGUccuu---GCAG---CGCGCGUGGGUCCg -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 57790 | 0.68 | 0.516342 |
Target: 5'- uGUCGGGuuggccgaggauuGCGUCGaGCGCugCgCGGGUc -3' miRNA: 3'- -CAGUCCu------------UGCAGCgCGCGugG-GUCCG- -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 57207 | 0.66 | 0.634428 |
Target: 5'- --aGGGGGCGgaUCGC-CGC-CCCAGGa -3' miRNA: 3'- cagUCCUUGC--AGCGcGCGuGGGUCCg -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 52992 | 0.67 | 0.581986 |
Target: 5'- -gCAGGAuuuggauuUGUCGC-CGCGgCUCGGGCa -3' miRNA: 3'- caGUCCUu-------GCAGCGcGCGU-GGGUCCG- -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 47485 | 0.67 | 0.592429 |
Target: 5'- -gCAGGAccGCGUCGCcgugGCGCGuuggCGGGCg -3' miRNA: 3'- caGUCCU--UGCAGCG----CGCGUgg--GUCCG- -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 47076 | 0.68 | 0.510329 |
Target: 5'- -cCAGGAACGcCGcCGCGaACCCAaGGa -3' miRNA: 3'- caGUCCUUGCaGC-GCGCgUGGGU-CCg -5' |
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18258 | 5' | -58.6 | NC_004681.1 | + | 46874 | 0.67 | 0.57158 |
Target: 5'- -gCGGGAugaccgugACGcCGUGCGCGCgCAGcGCc -3' miRNA: 3'- caGUCCU--------UGCaGCGCGCGUGgGUC-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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