miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18258 5' -58.6 NC_004681.1 + 7614 1.1 0.000611
Target:  5'- aGUCAGGAACGUCGCGCGCACCCAGGCc -3'
miRNA:   3'- -CAGUCCUUGCAGCGCGCGUGGGUCCG- -5'
18258 5' -58.6 NC_004681.1 + 33372 0.74 0.214079
Target:  5'- -cCGGccGCGUCGCGCGCGCCguguGGCa -3'
miRNA:   3'- caGUCcuUGCAGCGCGCGUGGgu--CCG- -5'
18258 5' -58.6 NC_004681.1 + 61781 0.74 0.230854
Target:  5'- -cCAGGAgcucuACGUCGCcaaucaggaGCGCACCCAGaaGCu -3'
miRNA:   3'- caGUCCU-----UGCAGCG---------CGCGUGGGUC--CG- -5'
18258 5' -58.6 NC_004681.1 + 44416 0.73 0.28103
Target:  5'- -aCAGGGuguGgGaCGCGCGCGCCCAGcGUg -3'
miRNA:   3'- caGUCCU---UgCaGCGCGCGUGGGUC-CG- -5'
18258 5' -58.6 NC_004681.1 + 62559 0.72 0.301966
Target:  5'- uGUCAuccaggagauGGAACGcCGggaGCGCGCCgAGGCg -3'
miRNA:   3'- -CAGU----------CCUUGCaGCg--CGCGUGGgUCCG- -5'
18258 5' -58.6 NC_004681.1 + 65031 0.72 0.309206
Target:  5'- -cCAGGcGCGUCGCcaccuCGUGCuCCAGGCg -3'
miRNA:   3'- caGUCCuUGCAGCGc----GCGUG-GGUCCG- -5'
18258 5' -58.6 NC_004681.1 + 43476 0.71 0.331719
Target:  5'- cUCAGGGAC--UGUGCGCGCCgGGGa -3'
miRNA:   3'- cAGUCCUUGcaGCGCGCGUGGgUCCg -5'
18258 5' -58.6 NC_004681.1 + 6566 0.71 0.355413
Target:  5'- gGUCGGGGAUaGUCcCG-GCACCgAGGCg -3'
miRNA:   3'- -CAGUCCUUG-CAGcGCgCGUGGgUCCG- -5'
18258 5' -58.6 NC_004681.1 + 59780 0.7 0.371859
Target:  5'- --aGGGGGCGUgGCgGCGCugCCAuguuGGCu -3'
miRNA:   3'- cagUCCUUGCAgCG-CGCGugGGU----CCG- -5'
18258 5' -58.6 NC_004681.1 + 2328 0.7 0.379427
Target:  5'- gGUCGGcGcccacuucuGCGUgcCGCGCGCcaacaagGCCCAGGCa -3'
miRNA:   3'- -CAGUC-Cu--------UGCA--GCGCGCG-------UGGGUCCG- -5'
18258 5' -58.6 NC_004681.1 + 19708 0.69 0.424211
Target:  5'- cGUCAucGAccACGcCGCaGCGCGCCCAGaGCu -3'
miRNA:   3'- -CAGUc-CU--UGCaGCG-CGCGUGGGUC-CG- -5'
18258 5' -58.6 NC_004681.1 + 58778 0.69 0.461465
Target:  5'- uGUCAcgcgcacCGUCgagGCGCGCGCCCAGGa -3'
miRNA:   3'- -CAGUccuu---GCAG---CGCGCGUGGGUCCg -5'
18258 5' -58.6 NC_004681.1 + 32165 0.69 0.471046
Target:  5'- cGUCaAGGAG-GUCGUGaacaCGCucaACCCGGGCa -3'
miRNA:   3'- -CAG-UCCUUgCAGCGC----GCG---UGGGUCCG- -5'
18258 5' -58.6 NC_004681.1 + 14459 0.69 0.474907
Target:  5'- --aGGcGAACGcCGCGCGCGCCgccuccgccgagcaGGGCg -3'
miRNA:   3'- cagUC-CUUGCaGCGCGCGUGGg-------------UCCG- -5'
18258 5' -58.6 NC_004681.1 + 70523 0.68 0.480727
Target:  5'- ---cGGAGacgaugacagcUGUCGCGCGCGCgCguGGCa -3'
miRNA:   3'- caguCCUU-----------GCAGCGCGCGUG-GguCCG- -5'
18258 5' -58.6 NC_004681.1 + 8388 0.68 0.500373
Target:  5'- cGUCcuuGGcGGCGUcCGCGC-CACCgAGGCu -3'
miRNA:   3'- -CAGu--CC-UUGCA-GCGCGcGUGGgUCCG- -5'
18258 5' -58.6 NC_004681.1 + 10007 0.68 0.510329
Target:  5'- uUCGGGGaagGCGUCG-GCcaGCugCUGGGCg -3'
miRNA:   3'- cAGUCCU---UGCAGCgCG--CGugGGUCCG- -5'
18258 5' -58.6 NC_004681.1 + 47076 0.68 0.510329
Target:  5'- -cCAGGAACGcCGcCGCGaACCCAaGGa -3'
miRNA:   3'- caGUCCUUGCaGC-GCGCgUGGGU-CCg -5'
18258 5' -58.6 NC_004681.1 + 36758 0.68 0.510329
Target:  5'- -cCAGGAuuACca-GCGCGuCugCCAGGCc -3'
miRNA:   3'- caGUCCU--UGcagCGCGC-GugGGUCCG- -5'
18258 5' -58.6 NC_004681.1 + 57790 0.68 0.516342
Target:  5'- uGUCGGGuuggccgaggauuGCGUCGaGCGCugCgCGGGUc -3'
miRNA:   3'- -CAGUCCu------------UGCAGCgCGCGugG-GUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.