miRNA display CGI


Results 1 - 20 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18264 5' -59.2 NC_004681.1 + 754 0.76 0.173636
Target:  5'- gCCUACCCGGCccuGCCgccCaUGACGGGGu -3'
miRNA:   3'- gGGGUGGGCCGu--CGGa--GaACUGCUCC- -5'
18264 5' -59.2 NC_004681.1 + 1429 0.71 0.366574
Target:  5'- gUCCCACggcuugaGGCAGCC-CUUGucgGCGAGGu -3'
miRNA:   3'- -GGGGUGgg-----CCGUCGGaGAAC---UGCUCC- -5'
18264 5' -59.2 NC_004681.1 + 1532 0.68 0.531422
Target:  5'- aCCCCuggugACCgGGcCAGCCUucagCUgggcGGCGGGGg -3'
miRNA:   3'- -GGGG-----UGGgCC-GUCGGA----GAa---CUGCUCC- -5'
18264 5' -59.2 NC_004681.1 + 2010 0.7 0.417641
Target:  5'- aCCCAUCCGGCcgcGGCCagguggucGugGAGGg -3'
miRNA:   3'- gGGGUGGGCCG---UCGGagaa----CugCUCC- -5'
18264 5' -59.2 NC_004681.1 + 2903 0.66 0.602769
Target:  5'- aCCCCuacauCCUGGgGGCCUggCUgGGCGAcGGc -3'
miRNA:   3'- -GGGGu----GGGCCgUCGGA--GAaCUGCU-CC- -5'
18264 5' -59.2 NC_004681.1 + 8323 0.67 0.589364
Target:  5'- aCCUCgGCCUGGUgggccuugaagucgGGUUcgaUCUUGGCGAGGg -3'
miRNA:   3'- -GGGG-UGGGCCG--------------UCGG---AGAACUGCUCC- -5'
18264 5' -59.2 NC_004681.1 + 11380 1.12 0.00046
Target:  5'- cCCCCACCCGGCAGCCUCUUGACGAGGa -3'
miRNA:   3'- -GGGGUGGGCCGUCGGAGAACUGCUCC- -5'
18264 5' -59.2 NC_004681.1 + 12391 0.69 0.469965
Target:  5'- aCCaCCACCgCGGCgacgcucgucggugAGCCggugacgGACGAGGa -3'
miRNA:   3'- -GG-GGUGG-GCCG--------------UCGGagaa---CUGCUCC- -5'
18264 5' -59.2 NC_004681.1 + 16117 0.67 0.551557
Target:  5'- gCCCUugCCaGCAGCCgg--GACGAu- -3'
miRNA:   3'- -GGGGugGGcCGUCGGagaaCUGCUcc -5'
18264 5' -59.2 NC_004681.1 + 17507 0.73 0.258028
Target:  5'- gCgCCACCCguggGGCGGCCgUCcaugaugUUGACGAGGu -3'
miRNA:   3'- -GgGGUGGG----CCGUCGG-AG-------AACUGCUCC- -5'
18264 5' -59.2 NC_004681.1 + 23337 0.68 0.49201
Target:  5'- aCCUCuuCCGGCAGCUUCagGcgccCGAGGu -3'
miRNA:   3'- -GGGGugGGCCGUCGGAGaaCu---GCUCC- -5'
18264 5' -59.2 NC_004681.1 + 23738 0.68 0.501742
Target:  5'- gCUCACCCGGCucGCCgUCgucGGCGAacGGg -3'
miRNA:   3'- gGGGUGGGCCGu-CGG-AGaa-CUGCU--CC- -5'
18264 5' -59.2 NC_004681.1 + 24939 0.67 0.571918
Target:  5'- gCCgCCGCCCGcGCcGCCgacgccGAUGAGGu -3'
miRNA:   3'- -GG-GGUGGGC-CGuCGGagaa--CUGCUCC- -5'
18264 5' -59.2 NC_004681.1 + 31589 0.74 0.22893
Target:  5'- aCCCCAgCCGGUcaccGCUUCgucaccugGACGAGGg -3'
miRNA:   3'- -GGGGUgGGCCGu---CGGAGaa------CUGCUCC- -5'
18264 5' -59.2 NC_004681.1 + 32001 0.66 0.613107
Target:  5'- gCCCGCgaUGGCGGCCgcc--GCGAGGu -3'
miRNA:   3'- gGGGUGg-GCCGUCGGagaacUGCUCC- -5'
18264 5' -59.2 NC_004681.1 + 32689 0.69 0.444748
Target:  5'- aCCCCGCCgacguCGcGCGGCUggugGAUGAGGa -3'
miRNA:   3'- -GGGGUGG-----GC-CGUCGGagaaCUGCUCC- -5'
18264 5' -59.2 NC_004681.1 + 33366 0.67 0.571918
Target:  5'- --aCACCCGGCAGCggaaCU--GCGAGGa -3'
miRNA:   3'- gggGUGGGCCGUCGga--GAacUGCUCC- -5'
18264 5' -59.2 NC_004681.1 + 36955 0.69 0.439247
Target:  5'- aCUCCACgCGGCGGCCgucaccggaacgccCUUGcACGAGu -3'
miRNA:   3'- -GGGGUGgGCCGUCGGa-------------GAAC-UGCUCc -5'
18264 5' -59.2 NC_004681.1 + 37771 0.68 0.501742
Target:  5'- aUCCCACUgGGagaAGUC-CUUGuCGAGGa -3'
miRNA:   3'- -GGGGUGGgCCg--UCGGaGAACuGCUCC- -5'
18264 5' -59.2 NC_004681.1 + 43887 0.68 0.482365
Target:  5'- gCCCUGCUCGGUcGCCUCUaUGGCugcuGGa -3'
miRNA:   3'- -GGGGUGGGCCGuCGGAGA-ACUGcu--CC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.