Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18264 | 5' | -59.2 | NC_004681.1 | + | 754 | 0.76 | 0.173636 |
Target: 5'- gCCUACCCGGCccuGCCgccCaUGACGGGGu -3' miRNA: 3'- gGGGUGGGCCGu--CGGa--GaACUGCUCC- -5' |
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18264 | 5' | -59.2 | NC_004681.1 | + | 2903 | 0.66 | 0.602769 |
Target: 5'- aCCCCuacauCCUGGgGGCCUggCUgGGCGAcGGc -3' miRNA: 3'- -GGGGu----GGGCCgUCGGA--GAaCUGCU-CC- -5' |
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18264 | 5' | -59.2 | NC_004681.1 | + | 60048 | 0.66 | 0.601737 |
Target: 5'- uCCCgCACCUGGCaccggcugaccguGGCCaUCgagGACGcGGg -3' miRNA: 3'- -GGG-GUGGGCCG-------------UCGG-AGaa-CUGCuCC- -5' |
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18264 | 5' | -59.2 | NC_004681.1 | + | 58878 | 0.67 | 0.571918 |
Target: 5'- aUCCACUCcucgacCAGCUUCUcgcUGACGAGGa -3' miRNA: 3'- gGGGUGGGcc----GUCGGAGA---ACUGCUCC- -5' |
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18264 | 5' | -59.2 | NC_004681.1 | + | 1532 | 0.68 | 0.531422 |
Target: 5'- aCCCCuggugACCgGGcCAGCCUucagCUgggcGGCGGGGg -3' miRNA: 3'- -GGGG-----UGGgCC-GUCGGA----GAa---CUGCUCC- -5' |
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18264 | 5' | -59.2 | NC_004681.1 | + | 37771 | 0.68 | 0.501742 |
Target: 5'- aUCCCACUgGGagaAGUC-CUUGuCGAGGa -3' miRNA: 3'- -GGGGUGGgCCg--UCGGaGAACuGCUCC- -5' |
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18264 | 5' | -59.2 | NC_004681.1 | + | 23337 | 0.68 | 0.49201 |
Target: 5'- aCCUCuuCCGGCAGCUUCagGcgccCGAGGu -3' miRNA: 3'- -GGGGugGGCCGUCGGAGaaCu---GCUCC- -5' |
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18264 | 5' | -59.2 | NC_004681.1 | + | 43887 | 0.68 | 0.482365 |
Target: 5'- gCCCUGCUCGGUcGCCUCUaUGGCugcuGGa -3' miRNA: 3'- -GGGGUGGGCCGuCGGAGA-ACUGcu--CC- -5' |
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18264 | 5' | -59.2 | NC_004681.1 | + | 12391 | 0.69 | 0.469965 |
Target: 5'- aCCaCCACCgCGGCgacgcucgucggugAGCCggugacgGACGAGGa -3' miRNA: 3'- -GG-GGUGG-GCCG--------------UCGGagaa---CUGCUCC- -5' |
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18264 | 5' | -59.2 | NC_004681.1 | + | 32689 | 0.69 | 0.444748 |
Target: 5'- aCCCCGCCgacguCGcGCGGCUggugGAUGAGGa -3' miRNA: 3'- -GGGGUGG-----GC-CGUCGGagaaCUGCUCC- -5' |
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18264 | 5' | -59.2 | NC_004681.1 | + | 36955 | 0.69 | 0.439247 |
Target: 5'- aCUCCACgCGGCGGCCgucaccggaacgccCUUGcACGAGu -3' miRNA: 3'- -GGGGUGgGCCGUCGGa-------------GAAC-UGCUCc -5' |
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18264 | 5' | -59.2 | NC_004681.1 | + | 2010 | 0.7 | 0.417641 |
Target: 5'- aCCCAUCCGGCcgcGGCCagguggucGugGAGGg -3' miRNA: 3'- gGGGUGGGCCG---UCGGagaa----CugCUCC- -5' |
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18264 | 5' | -59.2 | NC_004681.1 | + | 48037 | 0.71 | 0.335763 |
Target: 5'- cCCCCGCCUGGgGGCucuggaugccuuCUCUcauuggagugugaugGACGAGGa -3' miRNA: 3'- -GGGGUGGGCCgUCG------------GAGAa--------------CUGCUCC- -5' |
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18264 | 5' | -59.2 | NC_004681.1 | + | 31589 | 0.74 | 0.22893 |
Target: 5'- aCCCCAgCCGGUcaccGCUUCgucaccugGACGAGGg -3' miRNA: 3'- -GGGGUgGGCCGu---CGGAGaa------CUGCUCC- -5' |
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18264 | 5' | -59.2 | NC_004681.1 | + | 23738 | 0.68 | 0.501742 |
Target: 5'- gCUCACCCGGCucGCCgUCgucGGCGAacGGg -3' miRNA: 3'- gGGGUGGGCCGu-CGG-AGaa-CUGCU--CC- -5' |
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18264 | 5' | -59.2 | NC_004681.1 | + | 48345 | 0.69 | 0.441992 |
Target: 5'- gCCCGCgugcccguaucggaCUGGCgAGCCUC--GGCGAGGg -3' miRNA: 3'- gGGGUG--------------GGCCG-UCGGAGaaCUGCUCC- -5' |
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18264 | 5' | -59.2 | NC_004681.1 | + | 1429 | 0.71 | 0.366574 |
Target: 5'- gUCCCACggcuugaGGCAGCC-CUUGucgGCGAGGu -3' miRNA: 3'- -GGGGUGgg-----CCGUCGGaGAAC---UGCUCC- -5' |
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18264 | 5' | -59.2 | NC_004681.1 | + | 61539 | 0.71 | 0.358491 |
Target: 5'- gCCCCACUuguUGGCgucGGCUUCcUUGaACGAGGa -3' miRNA: 3'- -GGGGUGG---GCCG---UCGGAG-AAC-UGCUCC- -5' |
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18264 | 5' | -59.2 | NC_004681.1 | + | 17507 | 0.73 | 0.258028 |
Target: 5'- gCgCCACCCguggGGCGGCCgUCcaugaugUUGACGAGGu -3' miRNA: 3'- -GgGGUGGG----CCGUCGG-AG-------AACUGCUCC- -5' |
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18264 | 5' | -59.2 | NC_004681.1 | + | 55648 | 0.66 | 0.644178 |
Target: 5'- gCCCCAgCCGGUgauuccgacuagGGCCUUgaugguuaUGGCGGcGGu -3' miRNA: 3'- -GGGGUgGGCCG------------UCGGAGa-------ACUGCU-CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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