Results 41 - 60 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18267 | 3' | -59.9 | NC_004681.1 | + | 24977 | 0.68 | 0.458389 |
Target: 5'- cGGCGAcgggggcucUGGCGGcacaGGCGu-CgGCGGCa -3' miRNA: 3'- aCCGCU---------ACCGCC----UCGCuuGgUGCCGc -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 14887 | 0.68 | 0.458389 |
Target: 5'- gGGCgccagccuucagGAUGGCcaGGGCGu-CCGCGGCGu -3' miRNA: 3'- aCCG------------CUACCGc-CUCGCuuGGUGCCGC- -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 39929 | 0.68 | 0.449037 |
Target: 5'- gGcGCGGUGcgcGCGGuGCGGuCCACGGUc -3' miRNA: 3'- aC-CGCUAC---CGCCuCGCUuGGUGCCGc -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 2828 | 0.68 | 0.449037 |
Target: 5'- aGGUGAUGGuCGGAgGCGAcgaguuCGGCGc -3' miRNA: 3'- aCCGCUACC-GCCU-CGCUuggu--GCCGC- -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 46939 | 0.68 | 0.449037 |
Target: 5'- cGG-GGUGcCGGGGCGGuuGCCGCGGgGc -3' miRNA: 3'- aCCgCUACcGCCUCGCU--UGGUGCCgC- -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 27754 | 0.68 | 0.449036 |
Target: 5'- cGGUGAcGcGCGGcAGCGGcgGCaGCGGCGg -3' miRNA: 3'- aCCGCUaC-CGCC-UCGCU--UGgUGCCGC- -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 62891 | 0.68 | 0.438872 |
Target: 5'- aGGCGGuucaccuUGGCGuuGGCGAuaGCCAacuCGGCGg -3' miRNA: 3'- aCCGCU-------ACCGCc-UCGCU--UGGU---GCCGC- -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 21059 | 0.68 | 0.430654 |
Target: 5'- aGGCaaguGAUGGCGGGaCGAuaaaCACGGCc -3' miRNA: 3'- aCCG----CUACCGCCUcGCUug--GUGCCGc -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 51606 | 0.68 | 0.430654 |
Target: 5'- aGGUGGUGGCGucGGUGuAGCCGagcUGGCGg -3' miRNA: 3'- aCCGCUACCGCc-UCGC-UUGGU---GCCGC- -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 36396 | 0.68 | 0.430654 |
Target: 5'- gUGGUacGAcgUGGaCGGGGCGAACgGCGGg- -3' miRNA: 3'- -ACCG--CU--ACC-GCCUCGCUUGgUGCCgc -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 26954 | 0.68 | 0.421629 |
Target: 5'- gUGGCGGUGG-GGAcCGGcCCACuGCGg -3' miRNA: 3'- -ACCGCUACCgCCUcGCUuGGUGcCGC- -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 32231 | 0.69 | 0.403927 |
Target: 5'- cUGGuCGuUGGCGuGGGCc-GCCGCGGUGa -3' miRNA: 3'- -ACC-GCuACCGC-CUCGcuUGGUGCCGC- -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 28063 | 0.69 | 0.401312 |
Target: 5'- aGGCGGUGGCGGcaaGAaguccaacgacaaaACCuucaACGGCGg -3' miRNA: 3'- aCCGCUACCGCCucgCU--------------UGG----UGCCGC- -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 14486 | 0.69 | 0.395253 |
Target: 5'- uUGGCGucGGCGauGCGGuucuCCGCGGCGa -3' miRNA: 3'- -ACCGCuaCCGCcuCGCUu---GGUGCCGC- -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 1927 | 0.69 | 0.369968 |
Target: 5'- cGGCG-UGGUGGAGUuuGACCACGuCGa -3' miRNA: 3'- aCCGCuACCGCCUCGc-UUGGUGCcGC- -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 44691 | 0.7 | 0.361789 |
Target: 5'- gGGUGAguagugcGGCGGccGCGAG-CGCGGCGg -3' miRNA: 3'- aCCGCUa------CCGCCu-CGCUUgGUGCCGC- -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 14563 | 0.7 | 0.353736 |
Target: 5'- cGGCGGaGGCGGcGCG---CGCGGCGu -3' miRNA: 3'- aCCGCUaCCGCCuCGCuugGUGCCGC- -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 19632 | 0.7 | 0.353736 |
Target: 5'- cGGCGAgGGUGG-GCaAGCCugGGaCGg -3' miRNA: 3'- aCCGCUaCCGCCuCGcUUGGugCC-GC- -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 61859 | 0.7 | 0.353736 |
Target: 5'- cUGGcCGAUGGCGGccgcggucugguGGCGcGCgAgGGCGg -3' miRNA: 3'- -ACC-GCUACCGCC------------UCGCuUGgUgCCGC- -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 69223 | 0.7 | 0.345811 |
Target: 5'- aGGCGAgggaggccagGGCGcGGGCGAG--GCGGCGc -3' miRNA: 3'- aCCGCUa---------CCGC-CUCGCUUggUGCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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