miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18267 3' -59.9 NC_004681.1 + 14645 0.66 0.556888
Target:  5'- gUGGCGGUGGCGGcgauGCcGACCcCGuuGa -3'
miRNA:   3'- -ACCGCUACCGCCu---CGcUUGGuGCcgC- -5'
18267 3' -59.9 NC_004681.1 + 14887 0.68 0.458389
Target:  5'- gGGCgccagccuucagGAUGGCcaGGGCGu-CCGCGGCGu -3'
miRNA:   3'- aCCG------------CUACCGc-CUCGCuuGGUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 16025 0.72 0.273638
Target:  5'- -aGCGAUGGCcuGGAuggucuugaccGCG-GCCACGGCGa -3'
miRNA:   3'- acCGCUACCG--CCU-----------CGCuUGGUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 16160 0.66 0.542645
Target:  5'- gGGCGGcagucugcguugcGGCGGAuGCGGugacaGCgGCGGCGc -3'
miRNA:   3'- aCCGCUa------------CCGCCU-CGCU-----UGgUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 16201 0.7 0.322806
Target:  5'- -aGCcGUGGCGGcuguGCGcGCCGCGGUGg -3'
miRNA:   3'- acCGcUACCGCCu---CGCuUGGUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 16523 0.75 0.174724
Target:  5'- aUGGCgGGUGGCGGcaaCGGuccCCACGGCGg -3'
miRNA:   3'- -ACCG-CUACCGCCuc-GCUu--GGUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 18183 0.66 0.571236
Target:  5'- cGGgGAUGccgaugcccauacccGCGG-GCGGgacaaucggaagACCGCGGCGc -3'
miRNA:   3'- aCCgCUAC---------------CGCCuCGCU------------UGGUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 18187 0.66 0.577413
Target:  5'- cUGGCGGUccUGGAGCGccuCC-CGGCGc -3'
miRNA:   3'- -ACCGCUAccGCCUCGCuu-GGuGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 18367 0.74 0.203558
Target:  5'- gUGGCGccaucgacAUGGCaGGccaGGCGGcgGCCGCGGCGg -3'
miRNA:   3'- -ACCGC--------UACCG-CC---UCGCU--UGGUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 18737 0.66 0.546703
Target:  5'- gGGCGAcGGCG--GCGAgGCCGCGcGUGa -3'
miRNA:   3'- aCCGCUaCCGCcuCGCU-UGGUGC-CGC- -5'
18267 3' -59.9 NC_004681.1 + 19632 0.7 0.353736
Target:  5'- cGGCGAgGGUGG-GCaAGCCugGGaCGg -3'
miRNA:   3'- aCCGCUaCCGCCuCGcUUGGugCC-GC- -5'
18267 3' -59.9 NC_004681.1 + 21059 0.68 0.430654
Target:  5'- aGGCaaguGAUGGCGGGaCGAuaaaCACGGCc -3'
miRNA:   3'- aCCG----CUACCGCCUcGCUug--GUGCCGc -5'
18267 3' -59.9 NC_004681.1 + 22288 0.67 0.516531
Target:  5'- gGGCGcccugcccgucAUGGCGcaGGGUGAGCC-CGGUa -3'
miRNA:   3'- aCCGC-----------UACCGC--CUCGCUUGGuGCCGc -5'
18267 3' -59.9 NC_004681.1 + 24764 0.66 0.535569
Target:  5'- uUGGCGAUcagcucgGGCGGGuugucGgGGuCCGCGGUGu -3'
miRNA:   3'- -ACCGCUA-------CCGCCU-----CgCUuGGUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 24840 0.75 0.170287
Target:  5'- cGGCGucGGCGGcGCGGGCgGCGGCc -3'
miRNA:   3'- aCCGCuaCCGCCuCGCUUGgUGCCGc -5'
18267 3' -59.9 NC_004681.1 + 24887 0.66 0.536578
Target:  5'- aUGGCGAgGGCG--GCGAcCC-CGGCa -3'
miRNA:   3'- -ACCGCUaCCGCcuCGCUuGGuGCCGc -5'
18267 3' -59.9 NC_004681.1 + 24977 0.68 0.458389
Target:  5'- cGGCGAcgggggcucUGGCGGcacaGGCGu-CgGCGGCa -3'
miRNA:   3'- aCCGCU---------ACCGCC----UCGCuuGgUGCCGc -5'
18267 3' -59.9 NC_004681.1 + 25192 0.66 0.577413
Target:  5'- aGGCcccUGGCGGcgcuGGC-AACgGCGGCGa -3'
miRNA:   3'- aCCGcu-ACCGCC----UCGcUUGgUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 26231 0.67 0.510575
Target:  5'- cGGCGAUgcccgcccccuacgcGGUGGGGCaugacGGACUccuCGGCGg -3'
miRNA:   3'- aCCGCUA---------------CCGCCUCG-----CUUGGu--GCCGC- -5'
18267 3' -59.9 NC_004681.1 + 26886 0.66 0.535569
Target:  5'- cGGCGA-GGacauGGAGCGcauuGCCguugaguaucacaGCGGCGa -3'
miRNA:   3'- aCCGCUaCCg---CCUCGCu---UGG-------------UGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.