miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18267 3' -59.9 NC_004681.1 + 1861 0.7 0.322806
Target:  5'- gGGCGAUGGCcuGGGGaacuACCugGGUa -3'
miRNA:   3'- aCCGCUACCG--CCUCgcu-UGGugCCGc -5'
18267 3' -59.9 NC_004681.1 + 1927 0.69 0.369968
Target:  5'- cGGCG-UGGUGGAGUuuGACCACGuCGa -3'
miRNA:   3'- aCCGCuACCGCCUCGc-UUGGUGCcGC- -5'
18267 3' -59.9 NC_004681.1 + 2828 0.68 0.449037
Target:  5'- aGGUGAUGGuCGGAgGCGAcgaguuCGGCGc -3'
miRNA:   3'- aCCGCUACC-GCCU-CGCUuggu--GCCGC- -5'
18267 3' -59.9 NC_004681.1 + 2914 0.67 0.495814
Target:  5'- cUGGgGGccUGGCuGGGCGAcggcaccGCCACGcGCGc -3'
miRNA:   3'- -ACCgCU--ACCGcCUCGCU-------UGGUGC-CGC- -5'
18267 3' -59.9 NC_004681.1 + 3238 0.66 0.58774
Target:  5'- aGGCccUGGaGGAggGCGAGCCGCugGGCGc -3'
miRNA:   3'- aCCGcuACCgCCU--CGCUUGGUG--CCGC- -5'
18267 3' -59.9 NC_004681.1 + 3402 0.66 0.546703
Target:  5'- uUGGCcgcGGCGcccgcGCGAGCCACGcGCGc -3'
miRNA:   3'- -ACCGcuaCCGCcu---CGCUUGGUGC-CGC- -5'
18267 3' -59.9 NC_004681.1 + 4237 0.66 0.567127
Target:  5'- -aGCGAUGG-GGuuguuGCGGGCCucaGCGGCc -3'
miRNA:   3'- acCGCUACCgCCu----CGCUUGG---UGCCGc -5'
18267 3' -59.9 NC_004681.1 + 6835 0.66 0.567127
Target:  5'- cUGGuCGAUGGUGGcuaGGGCCuuGGUGa -3'
miRNA:   3'- -ACC-GCUACCGCCucgCUUGGugCCGC- -5'
18267 3' -59.9 NC_004681.1 + 7455 0.72 0.273638
Target:  5'- gGGCu-UGGCGGgaGGCuucGCCGCGGCGg -3'
miRNA:   3'- aCCGcuACCGCC--UCGcu-UGGUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 8624 0.66 0.577413
Target:  5'- cUGGcCGAUGGCcgcgGGGGCGGucucaccguCCGCgaaGGCGc -3'
miRNA:   3'- -ACC-GCUACCG----CCUCGCUu--------GGUG---CCGC- -5'
18267 3' -59.9 NC_004681.1 + 9863 0.85 0.031741
Target:  5'- uUGGCGuaGGCGGAGUGGACCGCGGgGa -3'
miRNA:   3'- -ACCGCuaCCGCCUCGCUUGGUGCCgC- -5'
18267 3' -59.9 NC_004681.1 + 11371 0.66 0.546703
Target:  5'- cUGGCGAccUGGCuGA-CGAAguCCACGaGCGg -3'
miRNA:   3'- -ACCGCU--ACCGcCUcGCUU--GGUGC-CGC- -5'
18267 3' -59.9 NC_004681.1 + 12194 0.67 0.516531
Target:  5'- -aGCGAgacGCGcGGGCGGACCuCGGCc -3'
miRNA:   3'- acCGCUac-CGC-CUCGCUUGGuGCCGc -5'
18267 3' -59.9 NC_004681.1 + 13131 0.73 0.235848
Target:  5'- uUGGCGAUGGCGGcgaugacAGUGucagUCGCGGCc -3'
miRNA:   3'- -ACCGCUACCGCC-------UCGCuu--GGUGCCGc -5'
18267 3' -59.9 NC_004681.1 + 13219 0.73 0.236431
Target:  5'- gGGCGGUGGCGGgcAGCGGGgCG-GGUGu -3'
miRNA:   3'- aCCGCUACCGCC--UCGCUUgGUgCCGC- -5'
18267 3' -59.9 NC_004681.1 + 13370 0.66 0.567127
Target:  5'- cGGacuCGAUGGCcuGGAcgcggaauucgGCGAGCUugacGCGGCGg -3'
miRNA:   3'- aCC---GCUACCG--CCU-----------CGCUUGG----UGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 13632 1.09 0.000546
Target:  5'- aUGGCGAUGGCGGAGCGAACCACGGCGg -3'
miRNA:   3'- -ACCGCUACCGCCUCGCUUGGUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 14449 0.73 0.230658
Target:  5'- -cGCGA-GGCGGAgGCGAacGCCGCGcGCGc -3'
miRNA:   3'- acCGCUaCCGCCU-CGCU--UGGUGC-CGC- -5'
18267 3' -59.9 NC_004681.1 + 14486 0.69 0.395253
Target:  5'- uUGGCGucGGCGauGCGGuucuCCGCGGCGa -3'
miRNA:   3'- -ACCGCuaCCGCcuCGCUu---GGUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 14563 0.7 0.353736
Target:  5'- cGGCGGaGGCGGcGCG---CGCGGCGu -3'
miRNA:   3'- aCCGCUaCCGCCuCGCuugGUGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.