miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18267 3' -59.9 NC_004681.1 + 3402 0.66 0.546703
Target:  5'- uUGGCcgcGGCGcccgcGCGAGCCACGcGCGc -3'
miRNA:   3'- -ACCGcuaCCGCcu---CGCUUGGUGC-CGC- -5'
18267 3' -59.9 NC_004681.1 + 2914 0.67 0.495814
Target:  5'- cUGGgGGccUGGCuGGGCGAcggcaccGCCACGcGCGc -3'
miRNA:   3'- -ACCgCU--ACCGcCUCGCU-------UGGUGC-CGC- -5'
18267 3' -59.9 NC_004681.1 + 30162 0.67 0.500713
Target:  5'- cGGCGcgGccGCGGAGUGGACCuacgccaagaacccuGaCGGCa -3'
miRNA:   3'- aCCGCuaC--CGCCUCGCUUGG---------------U-GCCGc -5'
18267 3' -59.9 NC_004681.1 + 26231 0.67 0.510575
Target:  5'- cGGCGAUgcccgcccccuacgcGGUGGGGCaugacGGACUccuCGGCGg -3'
miRNA:   3'- aCCGCUA---------------CCGCCUCG-----CUUGGu--GCCGC- -5'
18267 3' -59.9 NC_004681.1 + 22288 0.67 0.516531
Target:  5'- gGGCGcccugcccgucAUGGCGcaGGGUGAGCC-CGGUa -3'
miRNA:   3'- aCCGC-----------UACCGC--CUCGCUUGGuGCCGc -5'
18267 3' -59.9 NC_004681.1 + 32207 0.67 0.516531
Target:  5'- cGGCaaccUGGUGGAGCaGGCCaucgcaGCGGCa -3'
miRNA:   3'- aCCGcu--ACCGCCUCGcUUGG------UGCCGc -5'
18267 3' -59.9 NC_004681.1 + 26886 0.66 0.535569
Target:  5'- cGGCGA-GGacauGGAGCGcauuGCCguugaguaucacaGCGGCGa -3'
miRNA:   3'- aCCGCUaCCg---CCUCGCu---UGG-------------UGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 24887 0.66 0.536578
Target:  5'- aUGGCGAgGGCG--GCGAcCC-CGGCa -3'
miRNA:   3'- -ACCGCUaCCGCcuCGCUuGGuGCCGc -5'
18267 3' -59.9 NC_004681.1 + 62175 0.66 0.545687
Target:  5'- cGGCGGgcacgGGCGGcaagaucGGCGAGauugaggaCAUGGUGg -3'
miRNA:   3'- aCCGCUa----CCGCC-------UCGCUUg-------GUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 38204 0.67 0.4774
Target:  5'- aGGUuGUGGaUGGGGCGGccgaagacgucCCGCGGCGg -3'
miRNA:   3'- aCCGcUACC-GCCUCGCUu----------GGUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 24977 0.68 0.458389
Target:  5'- cGGCGAcgggggcucUGGCGGcacaGGCGu-CgGCGGCa -3'
miRNA:   3'- aCCGCU---------ACCGCC----UCGCuuGgUGCCGc -5'
18267 3' -59.9 NC_004681.1 + 27754 0.68 0.449036
Target:  5'- cGGUGAcGcGCGGcAGCGGcgGCaGCGGCGg -3'
miRNA:   3'- aCCGCUaC-CGCC-UCGCU--UGgUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 30705 0.76 0.137925
Target:  5'- gUGGCGGUGcgaacucccacauGUGGGGCGAGCUcgACGGCa -3'
miRNA:   3'- -ACCGCUAC-------------CGCCUCGCUUGG--UGCCGc -5'
18267 3' -59.9 NC_004681.1 + 24840 0.75 0.170287
Target:  5'- cGGCGucGGCGGcGCGGGCgGCGGCc -3'
miRNA:   3'- aCCGCuaCCGCCuCGCUUGgUGCCGc -5'
18267 3' -59.9 NC_004681.1 + 16523 0.75 0.174724
Target:  5'- aUGGCgGGUGGCGGcaaCGGuccCCACGGCGg -3'
miRNA:   3'- -ACCG-CUACCGCCuc-GCUu--GGUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 18367 0.74 0.203558
Target:  5'- gUGGCGccaucgacAUGGCaGGccaGGCGGcgGCCGCGGCGg -3'
miRNA:   3'- -ACCGC--------UACCG-CC---UCGCU--UGGUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 14449 0.73 0.230658
Target:  5'- -cGCGA-GGCGGAgGCGAacGCCGCGcGCGc -3'
miRNA:   3'- acCGCUaCCGCCU-CGCU--UGGUGC-CGC- -5'
18267 3' -59.9 NC_004681.1 + 62957 0.71 0.287044
Target:  5'- cGGCGGUGGUGGcGGCG----GCGGCGc -3'
miRNA:   3'- aCCGCUACCGCC-UCGCuuggUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 19632 0.7 0.353736
Target:  5'- cGGCGAgGGUGG-GCaAGCCugGGaCGg -3'
miRNA:   3'- aCCGCUaCCGCCuCGcUUGGugCC-GC- -5'
18267 3' -59.9 NC_004681.1 + 28063 0.69 0.401312
Target:  5'- aGGCGGUGGCGGcaaGAaguccaacgacaaaACCuucaACGGCGg -3'
miRNA:   3'- aCCGCUACCGCCucgCU--------------UGG----UGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.