miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18267 3' -59.9 NC_004681.1 + 13632 1.09 0.000546
Target:  5'- aUGGCGAUGGCGGAGCGAACCACGGCGg -3'
miRNA:   3'- -ACCGCUACCGCCUCGCUUGGUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 9863 0.85 0.031741
Target:  5'- uUGGCGuaGGCGGAGUGGACCGCGGgGa -3'
miRNA:   3'- -ACCGCuaCCGCCUCGCUUGGUGCCgC- -5'
18267 3' -59.9 NC_004681.1 + 28141 0.8 0.076723
Target:  5'- cGGCGgcGGCGGAuCGAGCgGCGGCa -3'
miRNA:   3'- aCCGCuaCCGCCUcGCUUGgUGCCGc -5'
18267 3' -59.9 NC_004681.1 + 30705 0.76 0.137925
Target:  5'- gUGGCGGUGcgaacucccacauGUGGGGCGAGCUcgACGGCa -3'
miRNA:   3'- -ACCGCUAC-------------CGCCUCGCUUGG--UGCCGc -5'
18267 3' -59.9 NC_004681.1 + 24840 0.75 0.170287
Target:  5'- cGGCGucGGCGGcGCGGGCgGCGGCc -3'
miRNA:   3'- aCCGCuaCCGCCuCGCUUGgUGCCGc -5'
18267 3' -59.9 NC_004681.1 + 74345 0.75 0.170288
Target:  5'- gGGCaAUGGCuGAGCacauGAGCUACGGCGg -3'
miRNA:   3'- aCCGcUACCGcCUCG----CUUGGUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 16523 0.75 0.174724
Target:  5'- aUGGCgGGUGGCGGcaaCGGuccCCACGGCGg -3'
miRNA:   3'- -ACCG-CUACCGCCuc-GCUu--GGUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 45210 0.74 0.202024
Target:  5'- cUGcGCGAcGGCGucggccccggucuuGAGCGAGaCCGCGGCGa -3'
miRNA:   3'- -AC-CGCUaCCGC--------------CUCGCUU-GGUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 18367 0.74 0.203558
Target:  5'- gUGGCGccaucgacAUGGCaGGccaGGCGGcgGCCGCGGCGg -3'
miRNA:   3'- -ACCGC--------UACCG-CC---UCGCU--UGGUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 46717 0.73 0.225005
Target:  5'- gGGCG-UGuGCGGGGCGGgguCCuCGGCGa -3'
miRNA:   3'- aCCGCuAC-CGCCUCGCUu--GGuGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 14449 0.73 0.230658
Target:  5'- -cGCGA-GGCGGAgGCGAacGCCGCGcGCGc -3'
miRNA:   3'- acCGCUaCCGCCU-CGCU--UGGUGC-CGC- -5'
18267 3' -59.9 NC_004681.1 + 13131 0.73 0.235848
Target:  5'- uUGGCGAUGGCGGcgaugacAGUGucagUCGCGGCc -3'
miRNA:   3'- -ACCGCUACCGCC-------UCGCuu--GGUGCCGc -5'
18267 3' -59.9 NC_004681.1 + 13219 0.73 0.236431
Target:  5'- gGGCGGUGGCGGgcAGCGGGgCG-GGUGu -3'
miRNA:   3'- aCCGCUACCGCC--UCGCUUgGUgCCGC- -5'
18267 3' -59.9 NC_004681.1 + 74845 0.72 0.254477
Target:  5'- aUGGUGA-GGCGGAG-GAcacCCGCGGCc -3'
miRNA:   3'- -ACCGCUaCCGCCUCgCUu--GGUGCCGc -5'
18267 3' -59.9 NC_004681.1 + 45786 0.72 0.266481
Target:  5'- cGGCGA-GGCGGGgcuugaguuccucGCGGACaACGGUGg -3'
miRNA:   3'- aCCGCUaCCGCCU-------------CGCUUGgUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 16025 0.72 0.273638
Target:  5'- -aGCGAUGGCcuGGAuggucuugaccGCG-GCCACGGCGa -3'
miRNA:   3'- acCGCUACCG--CCU-----------CGCuUGGUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 7455 0.72 0.273638
Target:  5'- gGGCu-UGGCGGgaGGCuucGCCGCGGCGg -3'
miRNA:   3'- aCCGcuACCGCC--UCGcu-UGGUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 62957 0.71 0.287044
Target:  5'- cGGCGGUGGUGGcGGCG----GCGGCGc -3'
miRNA:   3'- aCCGCUACCGCC-UCGCuuggUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 37127 0.71 0.300962
Target:  5'- cUGGCGAUGGCcggaaGGAGUGucagcGuuGCGGCa -3'
miRNA:   3'- -ACCGCUACCG-----CCUCGCu----UggUGCCGc -5'
18267 3' -59.9 NC_004681.1 + 1861 0.7 0.322806
Target:  5'- gGGCGAUGGCcuGGGGaacuACCugGGUa -3'
miRNA:   3'- aCCGCUACCG--CCUCgcu-UGGugCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.