miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18269 5' -56.3 NC_004681.1 + 56136 0.66 0.768473
Target:  5'- aGCUgcgUCUccacGguGAAGGcgauGCGGAgGUCGCc -3'
miRNA:   3'- -UGGa--AGA----CguCUUCC----CGCCUgCAGCG- -5'
18269 5' -56.3 NC_004681.1 + 7419 0.66 0.768473
Target:  5'- aGCCccg-GguGccGGGGGUGGAaCGUCGCu -3'
miRNA:   3'- -UGGaagaCguC--UUCCCGCCU-GCAGCG- -5'
18269 5' -56.3 NC_004681.1 + 57905 0.66 0.768473
Target:  5'- uCCUUCgccaccucgGCGGcgcGGCGcGugGUCGCg -3'
miRNA:   3'- uGGAAGa--------CGUCuucCCGC-CugCAGCG- -5'
18269 5' -56.3 NC_004681.1 + 50295 0.66 0.767488
Target:  5'- cACCUUggggugcUUGUGGAAGuugcGGCuaaccuGGACGUCGCu -3'
miRNA:   3'- -UGGAA-------GACGUCUUC----CCG------CCUGCAGCG- -5'
18269 5' -56.3 NC_004681.1 + 26331 0.66 0.758565
Target:  5'- cACCgc--GUAG-GGGGCGGGCaUCGCc -3'
miRNA:   3'- -UGGaagaCGUCuUCCCGCCUGcAGCG- -5'
18269 5' -56.3 NC_004681.1 + 35826 0.66 0.748536
Target:  5'- uCCgUCUGagaguucgaacCGGAuGGGUGGGCgGUCGCu -3'
miRNA:   3'- uGGaAGAC-----------GUCUuCCCGCCUG-CAGCG- -5'
18269 5' -56.3 NC_004681.1 + 37656 0.66 0.748536
Target:  5'- -aCUUCUGCGGGgccucgccAGcGGcCGcGCGUCGCu -3'
miRNA:   3'- ugGAAGACGUCU--------UC-CC-GCcUGCAGCG- -5'
18269 5' -56.3 NC_004681.1 + 74399 0.66 0.727124
Target:  5'- cGCUUcgaUCUGCacucGGAagucaccuuccGGGGCGGuccagccACGUCGCu -3'
miRNA:   3'- -UGGA---AGACG----UCU-----------UCCCGCC-------UGCAGCG- -5'
18269 5' -56.3 NC_004681.1 + 3237 0.66 0.71782
Target:  5'- gGCC--CUGgAGGAGGGCgagccgcuGGGCG-CGCg -3'
miRNA:   3'- -UGGaaGACgUCUUCCCG--------CCUGCaGCG- -5'
18269 5' -56.3 NC_004681.1 + 36887 0.67 0.707408
Target:  5'- uGCCUagUCaGCGG-GGGGCGGGCca-GCg -3'
miRNA:   3'- -UGGA--AGaCGUCuUCCCGCCUGcagCG- -5'
18269 5' -56.3 NC_004681.1 + 48664 0.67 0.696926
Target:  5'- gGCCcacgaUGCAGcAGGGCuGGGugcugcCGUCGCg -3'
miRNA:   3'- -UGGaag--ACGUCuUCCCG-CCU------GCAGCG- -5'
18269 5' -56.3 NC_004681.1 + 3572 0.67 0.695874
Target:  5'- aAUCUggaUGCAGAccgucuccacgguGGGGaCGGGCGUCa- -3'
miRNA:   3'- -UGGAag-ACGUCU-------------UCCC-GCCUGCAGcg -5'
18269 5' -56.3 NC_004681.1 + 62528 0.67 0.665166
Target:  5'- uCCUgggCgGCGGAgAGGGCGG-UGUCGg -3'
miRNA:   3'- uGGAa--GaCGUCU-UCCCGCCuGCAGCg -5'
18269 5' -56.3 NC_004681.1 + 62952 0.68 0.633142
Target:  5'- uCCUUCgGCGGuGGuGGCGGcgGCGgCGCg -3'
miRNA:   3'- uGGAAGaCGUCuUC-CCGCC--UGCaGCG- -5'
18269 5' -56.3 NC_004681.1 + 57609 0.68 0.622453
Target:  5'- gAUUUUCUGUuccguGAGGGcGCGGACGcucucacgcUCGCc -3'
miRNA:   3'- -UGGAAGACGu----CUUCC-CGCCUGC---------AGCG- -5'
18269 5' -56.3 NC_004681.1 + 54545 0.68 0.600043
Target:  5'- cACCgucguagCUGCGGAGGaugucucGGUcgacgcagcucuGGACGUCGCg -3'
miRNA:   3'- -UGGaa-----GACGUCUUC-------CCG------------CCUGCAGCG- -5'
18269 5' -56.3 NC_004681.1 + 18432 0.69 0.569299
Target:  5'- gGCaucgCUGUccAGAAGGGCauGGAgGUCGCc -3'
miRNA:   3'- -UGgaa-GACG--UCUUCCCG--CCUgCAGCG- -5'
18269 5' -56.3 NC_004681.1 + 62109 0.69 0.558782
Target:  5'- uCCUgCUGCAGuc-GGUGGACGagCGCa -3'
miRNA:   3'- uGGAaGACGUCuucCCGCCUGCa-GCG- -5'
18269 5' -56.3 NC_004681.1 + 34469 0.69 0.548321
Target:  5'- gACCUgccgugGCAcGAAGcaGCGGugGUCGCa -3'
miRNA:   3'- -UGGAaga---CGU-CUUCc-CGCCugCAGCG- -5'
18269 5' -56.3 NC_004681.1 + 50567 0.7 0.487073
Target:  5'- ------cGCAGGacacggucGGGGUGGGCGUCGCc -3'
miRNA:   3'- uggaagaCGUCU--------UCCCGCCUGCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.