miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18270 5' -54.7 NC_004681.1 + 14698 1.11 0.001261
Target:  5'- uCGACUCGAACUCGCCAGCCAGCUUGCc -3'
miRNA:   3'- -GCUGAGCUUGAGCGGUCGGUCGAACG- -5'
18270 5' -54.7 NC_004681.1 + 29546 0.75 0.315725
Target:  5'- cCGGCUCGGGCaUCGCC-GCCaAGUggGCa -3'
miRNA:   3'- -GCUGAGCUUG-AGCGGuCGG-UCGaaCG- -5'
18270 5' -54.7 NC_004681.1 + 67367 0.74 0.402589
Target:  5'- aCGACggaGAACUCGgCguugcggugcggcggGGCCAGCUUGUu -3'
miRNA:   3'- -GCUGag-CUUGAGCgG---------------UCGGUCGAACG- -5'
18270 5' -54.7 NC_004681.1 + 6321 0.73 0.417235
Target:  5'- uCGACUCGGACuUCGCCucCCAGUcggGCu -3'
miRNA:   3'- -GCUGAGCUUG-AGCGGucGGUCGaa-CG- -5'
18270 5' -54.7 NC_004681.1 + 48328 0.72 0.465013
Target:  5'- gGACUggCGAGCcUCGgCgagGGCCAGCUUGUa -3'
miRNA:   3'- gCUGA--GCUUG-AGCgG---UCGGUCGAACG- -5'
18270 5' -54.7 NC_004681.1 + 61175 0.71 0.546811
Target:  5'- -aGCUCGGGgUCGgCGGUCAGCgUGCc -3'
miRNA:   3'- gcUGAGCUUgAGCgGUCGGUCGaACG- -5'
18270 5' -54.7 NC_004681.1 + 50990 0.7 0.568029
Target:  5'- cCGACUCGAguauugGCagGCC-GCCuGCUUGUc -3'
miRNA:   3'- -GCUGAGCU------UGagCGGuCGGuCGAACG- -5'
18270 5' -54.7 NC_004681.1 + 50666 0.7 0.611006
Target:  5'- cCGGCgUUGggUuUCGCCAGCCAcaGCUUcaGCg -3'
miRNA:   3'- -GCUG-AGCuuG-AGCGGUCGGU--CGAA--CG- -5'
18270 5' -54.7 NC_004681.1 + 60683 0.7 0.620734
Target:  5'- gCGGCcucgUCGAGCaccacguUCGUCGGCCAGCggcccgagGCg -3'
miRNA:   3'- -GCUG----AGCUUG-------AGCGGUCGGUCGaa------CG- -5'
18270 5' -54.7 NC_004681.1 + 67138 0.69 0.632634
Target:  5'- gCGugUUGGuGCUggagauggUGCCAGUgAGCUUGCg -3'
miRNA:   3'- -GCugAGCU-UGA--------GCGGUCGgUCGAACG- -5'
18270 5' -54.7 NC_004681.1 + 10453 0.69 0.643452
Target:  5'- gCGGCguUCGAuCUCGCCAaCCuGCUUGg -3'
miRNA:   3'- -GCUG--AGCUuGAGCGGUcGGuCGAACg -5'
18270 5' -54.7 NC_004681.1 + 16666 0.69 0.65426
Target:  5'- gGGCUUGuagcGCUCGUCGGCaAGCU-GCa -3'
miRNA:   3'- gCUGAGCu---UGAGCGGUCGgUCGAaCG- -5'
18270 5' -54.7 NC_004681.1 + 1424 0.69 0.661815
Target:  5'- aCGGCUUGAggcaGCccuugucggcgaggUCGUCGGCCAGCUcGUc -3'
miRNA:   3'- -GCUGAGCU----UG--------------AGCGGUCGGUCGAaCG- -5'
18270 5' -54.7 NC_004681.1 + 16963 0.69 0.665048
Target:  5'- -uACgCGAGCaCGCUucucGGCCAGCUUGUg -3'
miRNA:   3'- gcUGaGCUUGaGCGG----UCGGUCGAACG- -5'
18270 5' -54.7 NC_004681.1 + 50244 0.68 0.686526
Target:  5'- cCGACUUGGACggagaugcCGCCGucGUCAGCgaggGCg -3'
miRNA:   3'- -GCUGAGCUUGa-------GCGGU--CGGUCGaa--CG- -5'
18270 5' -54.7 NC_004681.1 + 29749 0.68 0.69613
Target:  5'- aGAUgUCGAGCgcuuccgCGaCCugcugccaggugcAGCCAGCUUGCa -3'
miRNA:   3'- gCUG-AGCUUGa------GC-GG-------------UCGGUCGAACG- -5'
18270 5' -54.7 NC_004681.1 + 17752 0.68 0.707801
Target:  5'- gCGGgaUCGAAC-CGCCAGCgGGCcgguaguagUGCg -3'
miRNA:   3'- -GCUg-AGCUUGaGCGGUCGgUCGa--------ACG- -5'
18270 5' -54.7 NC_004681.1 + 18645 0.68 0.707801
Target:  5'- aCGACUUGGACggGUCcGCCAGCggUGa -3'
miRNA:   3'- -GCUGAGCUUGagCGGuCGGUCGa-ACg -5'
18270 5' -54.7 NC_004681.1 + 39884 0.68 0.716236
Target:  5'- uCGACcaggCGGGCggagacccccagCGCgCGGCCAGCU-GCg -3'
miRNA:   3'- -GCUGa---GCUUGa-----------GCG-GUCGGUCGAaCG- -5'
18270 5' -54.7 NC_004681.1 + 39623 0.68 0.73915
Target:  5'- uGACgcCGGGaUUGCCAGCCcGCUUGg -3'
miRNA:   3'- gCUGa-GCUUgAGCGGUCGGuCGAACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.