Results 1 - 20 of 36 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18270 | 5' | -54.7 | NC_004681.1 | + | 1424 | 0.69 | 0.661815 |
Target: 5'- aCGGCUUGAggcaGCccuugucggcgaggUCGUCGGCCAGCUcGUc -3' miRNA: 3'- -GCUGAGCU----UG--------------AGCGGUCGGUCGAaCG- -5' |
|||||||
18270 | 5' | -54.7 | NC_004681.1 | + | 1519 | 0.67 | 0.753476 |
Target: 5'- cCGcUUCGGACUCaccccuggugaccggGCCAGCCuucAGCUggGCg -3' miRNA: 3'- -GCuGAGCUUGAG---------------CGGUCGG---UCGAa-CG- -5' |
|||||||
18270 | 5' | -54.7 | NC_004681.1 | + | 6321 | 0.73 | 0.417235 |
Target: 5'- uCGACUCGGACuUCGCCucCCAGUcggGCu -3' miRNA: 3'- -GCUGAGCUUG-AGCGGucGGUCGaa-CG- -5' |
|||||||
18270 | 5' | -54.7 | NC_004681.1 | + | 10453 | 0.69 | 0.643452 |
Target: 5'- gCGGCguUCGAuCUCGCCAaCCuGCUUGg -3' miRNA: 3'- -GCUG--AGCUuGAGCGGUcGGuCGAACg -5' |
|||||||
18270 | 5' | -54.7 | NC_004681.1 | + | 11476 | 0.67 | 0.779438 |
Target: 5'- -cGCUCGugGACuUCGUCAGCCAGgUcGCc -3' miRNA: 3'- gcUGAGC--UUG-AGCGGUCGGUCgAaCG- -5' |
|||||||
18270 | 5' | -54.7 | NC_004681.1 | + | 13164 | 0.67 | 0.789168 |
Target: 5'- gCGGCuUCGAGCUCGgCGaugcgagcuuCCAGCUUGg -3' miRNA: 3'- -GCUG-AGCUUGAGCgGUc---------GGUCGAACg -5' |
|||||||
18270 | 5' | -54.7 | NC_004681.1 | + | 14522 | 0.66 | 0.826407 |
Target: 5'- gCGGCguaGAuuUUCGCCucGGCCGccuGCUUGCg -3' miRNA: 3'- -GCUGag-CUu-GAGCGG--UCGGU---CGAACG- -5' |
|||||||
18270 | 5' | -54.7 | NC_004681.1 | + | 14698 | 1.11 | 0.001261 |
Target: 5'- uCGACUCGAACUCGCCAGCCAGCUUGCc -3' miRNA: 3'- -GCUGAGCUUGAGCGGUCGGUCGAACG- -5' |
|||||||
18270 | 5' | -54.7 | NC_004681.1 | + | 16666 | 0.69 | 0.65426 |
Target: 5'- gGGCUUGuagcGCUCGUCGGCaAGCU-GCa -3' miRNA: 3'- gCUGAGCu---UGAGCGGUCGgUCGAaCG- -5' |
|||||||
18270 | 5' | -54.7 | NC_004681.1 | + | 16963 | 0.69 | 0.665048 |
Target: 5'- -uACgCGAGCaCGCUucucGGCCAGCUUGUg -3' miRNA: 3'- gcUGaGCUUGaGCGG----UCGGUCGAACG- -5' |
|||||||
18270 | 5' | -54.7 | NC_004681.1 | + | 17752 | 0.68 | 0.707801 |
Target: 5'- gCGGgaUCGAAC-CGCCAGCgGGCcgguaguagUGCg -3' miRNA: 3'- -GCUg-AGCUUGaGCGGUCGgUCGa--------ACG- -5' |
|||||||
18270 | 5' | -54.7 | NC_004681.1 | + | 18031 | 0.66 | 0.817369 |
Target: 5'- aCGGCUCGGGCaaCGCCucacGgCAGCgccGCg -3' miRNA: 3'- -GCUGAGCUUGa-GCGGu---CgGUCGaa-CG- -5' |
|||||||
18270 | 5' | -54.7 | NC_004681.1 | + | 18645 | 0.68 | 0.707801 |
Target: 5'- aCGACUUGGACggGUCcGCCAGCggUGa -3' miRNA: 3'- -GCUGAGCUUGagCGGuCGGUCGa-ACg -5' |
|||||||
18270 | 5' | -54.7 | NC_004681.1 | + | 27261 | 0.66 | 0.835246 |
Target: 5'- uCGugUCGAugUUggaguacccguaGCCcGCCGagaacGCUUGCa -3' miRNA: 3'- -GCugAGCUugAG------------CGGuCGGU-----CGAACG- -5' |
|||||||
18270 | 5' | -54.7 | NC_004681.1 | + | 29546 | 0.75 | 0.315725 |
Target: 5'- cCGGCUCGGGCaUCGCC-GCCaAGUggGCa -3' miRNA: 3'- -GCUGAGCUUG-AGCGGuCGG-UCGaaCG- -5' |
|||||||
18270 | 5' | -54.7 | NC_004681.1 | + | 29749 | 0.68 | 0.69613 |
Target: 5'- aGAUgUCGAGCgcuuccgCGaCCugcugccaggugcAGCCAGCUUGCa -3' miRNA: 3'- gCUG-AGCUUGa------GC-GG-------------UCGGUCGAACG- -5' |
|||||||
18270 | 5' | -54.7 | NC_004681.1 | + | 31969 | 0.66 | 0.816455 |
Target: 5'- aGAUUCuGAGCgugaaccagaucaUCGCCAGCauCGGCUcGCu -3' miRNA: 3'- gCUGAG-CUUG-------------AGCGGUCG--GUCGAaCG- -5' |
|||||||
18270 | 5' | -54.7 | NC_004681.1 | + | 39200 | 0.66 | 0.817369 |
Target: 5'- uCGACgUCGAGgaCGUCAGCCuggucgacugucAGCUcaccgUGCg -3' miRNA: 3'- -GCUG-AGCUUgaGCGGUCGG------------UCGA-----ACG- -5' |
|||||||
18270 | 5' | -54.7 | NC_004681.1 | + | 39623 | 0.68 | 0.73915 |
Target: 5'- uGACgcCGGGaUUGCCAGCCcGCUUGg -3' miRNA: 3'- gCUGa-GCUUgAGCGGUCGGuCGAACg -5' |
|||||||
18270 | 5' | -54.7 | NC_004681.1 | + | 39884 | 0.68 | 0.716236 |
Target: 5'- uCGACcaggCGGGCggagacccccagCGCgCGGCCAGCU-GCg -3' miRNA: 3'- -GCUGa---GCUUGa-----------GCG-GUCGGUCGAaCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home