Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18271 | 3' | -59.8 | NC_004681.1 | + | 46727 | 0.69 | 0.406057 |
Target: 5'- uUCCGCGGCaucgacgcuGUCAUGaacgugguGGGACCGGCgCUg -3' miRNA: 3'- -AGGCGCCG---------CAGUGC--------CUUUGGCCG-GAa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 31225 | 0.69 | 0.406057 |
Target: 5'- aUCGCaGCGUggCugGGGGACCGGCg-- -3' miRNA: 3'- aGGCGcCGCA--GugCCUUUGGCCGgaa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 19017 | 0.68 | 0.414934 |
Target: 5'- cCCGCGaCGggagCcUGGGGACCGGCCa- -3' miRNA: 3'- aGGCGCcGCa---GuGCCUUUGGCCGGaa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 63192 | 0.68 | 0.414934 |
Target: 5'- gUCCGCGGCGgagauCGGGAAgagguUCGGCUUc -3' miRNA: 3'- -AGGCGCCGCagu--GCCUUU-----GGCCGGAa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 7318 | 0.68 | 0.414934 |
Target: 5'- -gCGCGGUGUCGCcGuuACCGGCa-- -3' miRNA: 3'- agGCGCCGCAGUGcCuuUGGCCGgaa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 54961 | 0.68 | 0.414934 |
Target: 5'- gCCGCGGuCGUCcuugGCGucAGCCGGUCg- -3' miRNA: 3'- aGGCGCC-GCAG----UGCcuUUGGCCGGaa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 3107 | 0.68 | 0.42212 |
Target: 5'- gCCGCuGGCGUagucguaggagaGCGGguACCGGCUg- -3' miRNA: 3'- aGGCG-CCGCAg-----------UGCCuuUGGCCGGaa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 17819 | 0.68 | 0.442262 |
Target: 5'- -aCGCGGCGgcCGCGcaaGgcACCGGCCUc -3' miRNA: 3'- agGCGCCGCa-GUGC---CuuUGGCCGGAa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 6547 | 0.68 | 0.442262 |
Target: 5'- aCCGaGGCGg-GCGGAGACUGGUCc- -3' miRNA: 3'- aGGCgCCGCagUGCCUUUGGCCGGaa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 39327 | 0.68 | 0.447849 |
Target: 5'- gCCGCGGCG-CACGGugagcugacagucGACCaGGCUg- -3' miRNA: 3'- aGGCGCCGCaGUGCCu------------UUGG-CCGGaa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 61846 | 0.67 | 0.480222 |
Target: 5'- gCCGCGGUcuGguggCGCGcGAGGgCGGCCUc -3' miRNA: 3'- aGGCGCCG--Ca---GUGC-CUUUgGCCGGAa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 53512 | 0.67 | 0.48996 |
Target: 5'- aCCGCGGUGacaUCGCGGGcgucaAGCucaaCGGCCa- -3' miRNA: 3'- aGGCGCCGC---AGUGCCU-----UUG----GCCGGaa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 21924 | 0.67 | 0.509706 |
Target: 5'- gUCCaaGGUGUaUGCGGAGgcGCCGGUCUg -3' miRNA: 3'- -AGGcgCCGCA-GUGCCUU--UGGCCGGAa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 30985 | 0.67 | 0.509706 |
Target: 5'- gUCCGCguacagGGUGUCGCGGGgcuccAGCgGGUCg- -3' miRNA: 3'- -AGGCG------CCGCAGUGCCU-----UUGgCCGGaa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 30662 | 0.67 | 0.509706 |
Target: 5'- cCCGCGGaCGcCGCGGucAAGCUcGCCUUc -3' miRNA: 3'- aGGCGCC-GCaGUGCC--UUUGGcCGGAA- -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 56411 | 0.67 | 0.5187 |
Target: 5'- uUCCGCaGCG-CACaccuguuGGAGGCgGGCCg- -3' miRNA: 3'- -AGGCGcCGCaGUG-------CCUUUGgCCGGaa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 41964 | 0.67 | 0.523724 |
Target: 5'- cCUGCgagguaGGCGUgggacaggucggcucCGCGGAGAUCGGCCc- -3' miRNA: 3'- aGGCG------CCGCA---------------GUGCCUUUGGCCGGaa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 49228 | 0.66 | 0.529777 |
Target: 5'- cCCGCGuCGUCuuGGucACCGGCUc- -3' miRNA: 3'- aGGCGCcGCAGugCCuuUGGCCGGaa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 33276 | 0.66 | 0.529777 |
Target: 5'- uUCCGCugccgGGUGUCAUcGAcGCCGGUCg- -3' miRNA: 3'- -AGGCG-----CCGCAGUGcCUuUGGCCGGaa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 614 | 0.66 | 0.529777 |
Target: 5'- cUCGCGGC--CGCGGAAGauGGCCg- -3' miRNA: 3'- aGGCGCCGcaGUGCCUUUggCCGGaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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