Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18271 | 3' | -59.8 | NC_004681.1 | + | 54961 | 0.68 | 0.414934 |
Target: 5'- gCCGCGGuCGUCcuugGCGucAGCCGGUCg- -3' miRNA: 3'- aGGCGCC-GCAG----UGCcuUUGGCCGGaa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 19017 | 0.68 | 0.414934 |
Target: 5'- cCCGCGaCGggagCcUGGGGACCGGCCa- -3' miRNA: 3'- aGGCGCcGCa---GuGCCUUUGGCCGGaa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 7318 | 0.68 | 0.414934 |
Target: 5'- -gCGCGGUGUCGCcGuuACCGGCa-- -3' miRNA: 3'- agGCGCCGCAGUGcCuuUGGCCGgaa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 3107 | 0.68 | 0.42212 |
Target: 5'- gCCGCuGGCGUagucguaggagaGCGGguACCGGCUg- -3' miRNA: 3'- aGGCG-CCGCAg-----------UGCCuuUGGCCGGaa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 6547 | 0.68 | 0.442262 |
Target: 5'- aCCGaGGCGg-GCGGAGACUGGUCc- -3' miRNA: 3'- aGGCgCCGCagUGCCUUUGGCCGGaa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 39327 | 0.68 | 0.447849 |
Target: 5'- gCCGCGGCG-CACGGugagcugacagucGACCaGGCUg- -3' miRNA: 3'- aGGCGCCGCaGUGCCu------------UUGG-CCGGaa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 61846 | 0.67 | 0.480222 |
Target: 5'- gCCGCGGUcuGguggCGCGcGAGGgCGGCCUc -3' miRNA: 3'- aGGCGCCG--Ca---GUGC-CUUUgGCCGGAa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 21924 | 0.67 | 0.509706 |
Target: 5'- gUCCaaGGUGUaUGCGGAGgcGCCGGUCUg -3' miRNA: 3'- -AGGcgCCGCA-GUGCCUU--UGGCCGGAa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 30985 | 0.67 | 0.509706 |
Target: 5'- gUCCGCguacagGGUGUCGCGGGgcuccAGCgGGUCg- -3' miRNA: 3'- -AGGCG------CCGCAGUGCCU-----UUGgCCGGaa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 39216 | 0.7 | 0.347385 |
Target: 5'- gUCGCGGCgGUCGCGGAAgguguuGCCcgcgcagguGGCCa- -3' miRNA: 3'- aGGCGCCG-CAGUGCCUU------UGG---------CCGGaa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 13090 | 0.7 | 0.347385 |
Target: 5'- gUCCGCGGUGcCAgCGGuguAGCCGGUg-- -3' miRNA: 3'- -AGGCGCCGCaGU-GCCu--UUGGCCGgaa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 24735 | 0.76 | 0.134569 |
Target: 5'- gUCCGCGGUguuGUCGCGGGAugCaGCCa- -3' miRNA: 3'- -AGGCGCCG---CAGUGCCUUugGcCGGaa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 40245 | 0.75 | 0.157578 |
Target: 5'- aUCUGCGGCGUCGCGG---CCuGCCUg -3' miRNA: 3'- -AGGCGCCGCAGUGCCuuuGGcCGGAa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 51422 | 0.74 | 0.179408 |
Target: 5'- cUCCGCGGCGacggugaugacgUCgGCGGAcucACCGGCCa- -3' miRNA: 3'- -AGGCGCCGC------------AG-UGCCUu--UGGCCGGaa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 30753 | 0.71 | 0.281242 |
Target: 5'- aCCGCGGCGUcCGCGGGAAUCucGCUc- -3' miRNA: 3'- aGGCGCCGCA-GUGCCUUUGGc-CGGaa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 20112 | 0.71 | 0.297847 |
Target: 5'- cUCCGCGGU-UCGacagcgccaagugccCGGAcuGACCGGCCUg -3' miRNA: 3'- -AGGCGCCGcAGU---------------GCCU--UUGGCCGGAa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 14466 | 0.71 | 0.309333 |
Target: 5'- cUCCGCGGCGaUCAUGcgggcGGAGgUGGCCUc -3' miRNA: 3'- -AGGCGCCGC-AGUGC-----CUUUgGCCGGAa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 17666 | 0.71 | 0.312257 |
Target: 5'- gCCGCGGCGUCACugccccaguugaaggGGguGCCgccagggagcguGGCCUg -3' miRNA: 3'- aGGCGCCGCAGUG---------------CCuuUGG------------CCGGAa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 39264 | 0.7 | 0.316682 |
Target: 5'- cUCCGCGGCc---CGGAuGCCGGUCUc -3' miRNA: 3'- -AGGCGCCGcaguGCCUuUGGCCGGAa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 40560 | 0.7 | 0.347385 |
Target: 5'- gCCGCGGCGuUCAauGucAUCGGCCg- -3' miRNA: 3'- aGGCGCCGC-AGUgcCuuUGGCCGGaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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