miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18271 3' -59.8 NC_004681.1 + 21349 0.77 0.111653
Target:  5'- --aGCGGCGUCACGGGuccuACCGGCa-- -3'
miRNA:   3'- aggCGCCGCAGUGCCUu---UGGCCGgaa -5'
18271 3' -59.8 NC_004681.1 + 53512 0.67 0.48996
Target:  5'- aCCGCGGUGacaUCGCGGGcgucaAGCucaaCGGCCa- -3'
miRNA:   3'- aGGCGCCGC---AGUGCCU-----UUG----GCCGGaa -5'
18271 3' -59.8 NC_004681.1 + 30662 0.67 0.509706
Target:  5'- cCCGCGGaCGcCGCGGucAAGCUcGCCUUc -3'
miRNA:   3'- aGGCGCC-GCaGUGCC--UUUGGcCGGAA- -5'
18271 3' -59.8 NC_004681.1 + 56411 0.67 0.5187
Target:  5'- uUCCGCaGCG-CACaccuguuGGAGGCgGGCCg- -3'
miRNA:   3'- -AGGCGcCGCaGUG-------CCUUUGgCCGGaa -5'
18271 3' -59.8 NC_004681.1 + 33276 0.66 0.529777
Target:  5'- uUCCGCugccgGGUGUCAUcGAcGCCGGUCg- -3'
miRNA:   3'- -AGGCG-----CCGCAGUGcCUuUGGCCGGaa -5'
18271 3' -59.8 NC_004681.1 + 49228 0.66 0.529777
Target:  5'- cCCGCGuCGUCuuGGucACCGGCUc- -3'
miRNA:   3'- aGGCGCcGCAGugCCuuUGGCCGGaa -5'
18271 3' -59.8 NC_004681.1 + 14767 0.66 0.539921
Target:  5'- uUCCGUGaCGcCGCGGAcGCCcuGGCCa- -3'
miRNA:   3'- -AGGCGCcGCaGUGCCUuUGG--CCGGaa -5'
18271 3' -59.8 NC_004681.1 + 25823 0.66 0.569684
Target:  5'- aCCGCGGUGcUCAUGGcaauccaGGACgGGCUc- -3'
miRNA:   3'- aGGCGCCGC-AGUGCC-------UUUGgCCGGaa -5'
18271 3' -59.8 NC_004681.1 + 65075 0.66 0.570718
Target:  5'- cCCGCucgGGUgGUCGCcGAggUCGGCCUg -3'
miRNA:   3'- aGGCG---CCG-CAGUGcCUuuGGCCGGAa -5'
18271 3' -59.8 NC_004681.1 + 17819 0.68 0.442262
Target:  5'- -aCGCGGCGgcCGCGcaaGgcACCGGCCUc -3'
miRNA:   3'- agGCGCCGCa-GUGC---CuuUGGCCGGAa -5'
18271 3' -59.8 NC_004681.1 + 63192 0.68 0.414934
Target:  5'- gUCCGCGGCGgagauCGGGAAgagguUCGGCUUc -3'
miRNA:   3'- -AGGCGCCGCagu--GCCUUU-----GGCCGGAa -5'
18271 3' -59.8 NC_004681.1 + 2019 0.72 0.255214
Target:  5'- gCCGCGGCcaggugGUCGUGGAGGgCGGCCg- -3'
miRNA:   3'- aGGCGCCG------CAGUGCCUUUgGCCGGaa -5'
18271 3' -59.8 NC_004681.1 + 12951 0.72 0.26153
Target:  5'- --aGCGGCaacGUCACGcuGACCGGCCUg -3'
miRNA:   3'- aggCGCCG---CAGUGCcuUUGGCCGGAa -5'
18271 3' -59.8 NC_004681.1 + 39960 0.71 0.28807
Target:  5'- aUCCGCGcGCGUCGgcgcCGGGucaacucaccGGCuCGGCCUUg -3'
miRNA:   3'- -AGGCGC-CGCAGU----GCCU----------UUG-GCCGGAA- -5'
18271 3' -59.8 NC_004681.1 + 16313 0.7 0.316682
Target:  5'- cCCGCGGCcggaUCgACGGAAGCCgagcaGGCCa- -3'
miRNA:   3'- aGGCGCCGc---AG-UGCCUUUGG-----CCGGaa -5'
18271 3' -59.8 NC_004681.1 + 5782 0.69 0.363515
Target:  5'- aCCGCGGCGaugUGGAAgaacGCUGGCCg- -3'
miRNA:   3'- aGGCGCCGCaguGCCUU----UGGCCGGaa -5'
18271 3' -59.8 NC_004681.1 + 12397 0.69 0.388667
Target:  5'- aCCGCGGCGacgcUCGuCGGuGAGCCGGUg-- -3'
miRNA:   3'- aGGCGCCGC----AGU-GCC-UUUGGCCGgaa -5'
18271 3' -59.8 NC_004681.1 + 46727 0.69 0.406057
Target:  5'- uUCCGCGGCaucgacgcuGUCAUGaacgugguGGGACCGGCgCUg -3'
miRNA:   3'- -AGGCGCCG---------CAGUGC--------CUUUGGCCG-GAa -5'
18271 3' -59.8 NC_004681.1 + 31225 0.69 0.406057
Target:  5'- aUCGCaGCGUggCugGGGGACCGGCg-- -3'
miRNA:   3'- aGGCGcCGCA--GugCCUUUGGCCGgaa -5'
18271 3' -59.8 NC_004681.1 + 49432 0.66 0.56452
Target:  5'- cCCGCGGCGcCgccgugGCGGAcggugagguugugcaGACCGcccGCCUUg -3'
miRNA:   3'- aGGCGCCGCaG------UGCCU---------------UUGGC---CGGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.