Results 1 - 20 of 47 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18271 | 3' | -59.8 | NC_004681.1 | + | 614 | 0.66 | 0.529777 |
Target: 5'- cUCGCGGC--CGCGGAAGauGGCCg- -3' miRNA: 3'- aGGCGCCGcaGUGCCUUUggCCGGaa -5' |
|||||||
18271 | 3' | -59.8 | NC_004681.1 | + | 2019 | 0.72 | 0.255214 |
Target: 5'- gCCGCGGCcaggugGUCGUGGAGGgCGGCCg- -3' miRNA: 3'- aGGCGCCG------CAGUGCCUUUgGCCGGaa -5' |
|||||||
18271 | 3' | -59.8 | NC_004681.1 | + | 3107 | 0.68 | 0.42212 |
Target: 5'- gCCGCuGGCGUagucguaggagaGCGGguACCGGCUg- -3' miRNA: 3'- aGGCG-CCGCAg-----------UGCCuuUGGCCGGaa -5' |
|||||||
18271 | 3' | -59.8 | NC_004681.1 | + | 5782 | 0.69 | 0.363515 |
Target: 5'- aCCGCGGCGaugUGGAAgaacGCUGGCCg- -3' miRNA: 3'- aGGCGCCGCaguGCCUU----UGGCCGGaa -5' |
|||||||
18271 | 3' | -59.8 | NC_004681.1 | + | 6547 | 0.68 | 0.442262 |
Target: 5'- aCCGaGGCGg-GCGGAGACUGGUCc- -3' miRNA: 3'- aGGCgCCGCagUGCCUUUGGCCGGaa -5' |
|||||||
18271 | 3' | -59.8 | NC_004681.1 | + | 7318 | 0.68 | 0.414934 |
Target: 5'- -gCGCGGUGUCGCcGuuACCGGCa-- -3' miRNA: 3'- agGCGCCGCAGUGcCuuUGGCCGgaa -5' |
|||||||
18271 | 3' | -59.8 | NC_004681.1 | + | 12397 | 0.69 | 0.388667 |
Target: 5'- aCCGCGGCGacgcUCGuCGGuGAGCCGGUg-- -3' miRNA: 3'- aGGCGCCGC----AGU-GCC-UUUGGCCGgaa -5' |
|||||||
18271 | 3' | -59.8 | NC_004681.1 | + | 12951 | 0.72 | 0.26153 |
Target: 5'- --aGCGGCaacGUCACGcuGACCGGCCUg -3' miRNA: 3'- aggCGCCG---CAGUGCcuUUGGCCGGAa -5' |
|||||||
18271 | 3' | -59.8 | NC_004681.1 | + | 13090 | 0.7 | 0.347385 |
Target: 5'- gUCCGCGGUGcCAgCGGuguAGCCGGUg-- -3' miRNA: 3'- -AGGCGCCGCaGU-GCCu--UUGGCCGgaa -5' |
|||||||
18271 | 3' | -59.8 | NC_004681.1 | + | 14466 | 0.71 | 0.309333 |
Target: 5'- cUCCGCGGCGaUCAUGcgggcGGAGgUGGCCUc -3' miRNA: 3'- -AGGCGCCGC-AGUGC-----CUUUgGCCGGAa -5' |
|||||||
18271 | 3' | -59.8 | NC_004681.1 | + | 14767 | 0.66 | 0.539921 |
Target: 5'- uUCCGUGaCGcCGCGGAcGCCcuGGCCa- -3' miRNA: 3'- -AGGCGCcGCaGUGCCUuUGG--CCGGaa -5' |
|||||||
18271 | 3' | -59.8 | NC_004681.1 | + | 14859 | 1.05 | 0.001075 |
Target: 5'- gUCCGCGGCGUCACGGAAACCGGCCUUc -3' miRNA: 3'- -AGGCGCCGCAGUGCCUUUGGCCGGAA- -5' |
|||||||
18271 | 3' | -59.8 | NC_004681.1 | + | 16313 | 0.7 | 0.316682 |
Target: 5'- cCCGCGGCcggaUCgACGGAAGCCgagcaGGCCa- -3' miRNA: 3'- aGGCGCCGc---AG-UGCCUUUGG-----CCGGaa -5' |
|||||||
18271 | 3' | -59.8 | NC_004681.1 | + | 17666 | 0.71 | 0.312257 |
Target: 5'- gCCGCGGCGUCACugccccaguugaaggGGguGCCgccagggagcguGGCCUg -3' miRNA: 3'- aGGCGCCGCAGUG---------------CCuuUGG------------CCGGAa -5' |
|||||||
18271 | 3' | -59.8 | NC_004681.1 | + | 17819 | 0.68 | 0.442262 |
Target: 5'- -aCGCGGCGgcCGCGcaaGgcACCGGCCUc -3' miRNA: 3'- agGCGCCGCa-GUGC---CuuUGGCCGGAa -5' |
|||||||
18271 | 3' | -59.8 | NC_004681.1 | + | 19017 | 0.68 | 0.414934 |
Target: 5'- cCCGCGaCGggagCcUGGGGACCGGCCa- -3' miRNA: 3'- aGGCGCcGCa---GuGCCUUUGGCCGGaa -5' |
|||||||
18271 | 3' | -59.8 | NC_004681.1 | + | 20112 | 0.71 | 0.297847 |
Target: 5'- cUCCGCGGU-UCGacagcgccaagugccCGGAcuGACCGGCCUg -3' miRNA: 3'- -AGGCGCCGcAGU---------------GCCU--UUGGCCGGAa -5' |
|||||||
18271 | 3' | -59.8 | NC_004681.1 | + | 21349 | 0.77 | 0.111653 |
Target: 5'- --aGCGGCGUCACGGGuccuACCGGCa-- -3' miRNA: 3'- aggCGCCGCAGUGCCUu---UGGCCGgaa -5' |
|||||||
18271 | 3' | -59.8 | NC_004681.1 | + | 21924 | 0.67 | 0.509706 |
Target: 5'- gUCCaaGGUGUaUGCGGAGgcGCCGGUCUg -3' miRNA: 3'- -AGGcgCCGCA-GUGCCUU--UGGCCGGAa -5' |
|||||||
18271 | 3' | -59.8 | NC_004681.1 | + | 24735 | 0.76 | 0.134569 |
Target: 5'- gUCCGCGGUguuGUCGCGGGAugCaGCCa- -3' miRNA: 3'- -AGGCGCCG---CAGUGCCUUugGcCGGaa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home