miRNA display CGI


Results 1 - 20 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18272 3' -64.8 NC_004681.1 + 75419 0.74 0.105239
Target:  5'- uUCCGCGCGGCCGUacucgCGGcGCagCCCACGu -3'
miRNA:   3'- -GGGUGCGCCGGCG-----GUC-CGagGGGUGU- -5'
18272 3' -64.8 NC_004681.1 + 69869 0.68 0.246286
Target:  5'- -gCGCGCGGCCGCU-GGCaaaCCUACu -3'
miRNA:   3'- ggGUGCGCCGGCGGuCCGag-GGGUGu -5'
18272 3' -64.8 NC_004681.1 + 67034 0.66 0.355093
Target:  5'- -gCGCGCGGCa-CCAGGg-CCgCCACAg -3'
miRNA:   3'- ggGUGCGCCGgcGGUCCgaGG-GGUGU- -5'
18272 3' -64.8 NC_004681.1 + 65074 0.66 0.355093
Target:  5'- cCCCGCucggGUGGUCGCCgAGGUcggCCUgGCAa -3'
miRNA:   3'- -GGGUG----CGCCGGCGG-UCCGa--GGGgUGU- -5'
18272 3' -64.8 NC_004681.1 + 62615 0.69 0.208098
Target:  5'- --gAgGCGGCUGCCAGGgUgCCCAUg -3'
miRNA:   3'- gggUgCGCCGGCGGUCCgAgGGGUGu -5'
18272 3' -64.8 NC_004681.1 + 62455 0.66 0.339804
Target:  5'- aCCCGaaUGGCCGagGGGCacgaCCCCACGg -3'
miRNA:   3'- -GGGUgcGCCGGCggUCCGa---GGGGUGU- -5'
18272 3' -64.8 NC_004681.1 + 61759 0.7 0.193358
Target:  5'- aCCAgacCGCGGCCGCCAucGGCcaggagCUCUACGu -3'
miRNA:   3'- gGGU---GCGCCGGCGGU--CCGa-----GGGGUGU- -5'
18272 3' -64.8 NC_004681.1 + 59203 0.66 0.337552
Target:  5'- uCCCGgGCGGCuCGuCCAGcuuccagaacgucaGCUCCUCAa- -3'
miRNA:   3'- -GGGUgCGCCG-GC-GGUC--------------CGAGGGGUgu -5'
18272 3' -64.8 NC_004681.1 + 57462 0.71 0.162484
Target:  5'- aCCCAUG-GGaacgaGCCcuugGGGCUCCCCGCGg -3'
miRNA:   3'- -GGGUGCgCCgg---CGG----UCCGAGGGGUGU- -5'
18272 3' -64.8 NC_004681.1 + 56756 0.7 0.198167
Target:  5'- aCCUACGaCGuGCCGCgGGGCgaggCCCACc -3'
miRNA:   3'- -GGGUGC-GC-CGGCGgUCCGag--GGGUGu -5'
18272 3' -64.8 NC_004681.1 + 55978 0.71 0.154514
Target:  5'- gCCgguGCuCGGCUGCCAGGC-CCUCACGc -3'
miRNA:   3'- gGG---UGcGCCGGCGGUCCGaGGGGUGU- -5'
18272 3' -64.8 NC_004681.1 + 51836 0.76 0.067359
Target:  5'- gCCCGCgccgggGCGGCCGCCgacgaccaccAGGUUCCCCGgGg -3'
miRNA:   3'- -GGGUG------CGCCGGCGG----------UCCGAGGGGUgU- -5'
18272 3' -64.8 NC_004681.1 + 51727 0.68 0.276992
Target:  5'- aCCugGUGGUCGUCGgcGGCcgCCCCGg- -3'
miRNA:   3'- gGGugCGCCGGCGGU--CCGa-GGGGUgu -5'
18272 3' -64.8 NC_004681.1 + 50272 0.69 0.208098
Target:  5'- uCCCGCGCccaCCGCaagaaGGGCcacgUCCCCGCGg -3'
miRNA:   3'- -GGGUGCGcc-GGCGg----UCCG----AGGGGUGU- -5'
18272 3' -64.8 NC_004681.1 + 50010 0.68 0.276992
Target:  5'- uCCCGCGC-GCCGUCuGGCcgCgCUACAa -3'
miRNA:   3'- -GGGUGCGcCGGCGGuCCGa-GgGGUGU- -5'
18272 3' -64.8 NC_004681.1 + 48776 0.72 0.136118
Target:  5'- gCCCAUGggagcUGGcCCGCCAGGgUUCCCGCc -3'
miRNA:   3'- -GGGUGC-----GCC-GGCGGUCCgAGGGGUGu -5'
18272 3' -64.8 NC_004681.1 + 46837 0.66 0.370861
Target:  5'- gCCC-CGCGGCaacCGCCccGGCaCCCCGa- -3'
miRNA:   3'- -GGGuGCGCCG---GCGGu-CCGaGGGGUgu -5'
18272 3' -64.8 NC_004681.1 + 45585 0.67 0.283488
Target:  5'- gCCCGCaaGGUgGCCGGuGcCUCCuCCGCGu -3'
miRNA:   3'- -GGGUGcgCCGgCGGUC-C-GAGG-GGUGU- -5'
18272 3' -64.8 NC_004681.1 + 45043 0.66 0.324998
Target:  5'- gCCCGagcuCGCGGUgGC--GGCUCCaCCGCGu -3'
miRNA:   3'- -GGGU----GCGCCGgCGguCCGAGG-GGUGU- -5'
18272 3' -64.8 NC_004681.1 + 44934 0.7 0.175133
Target:  5'- cCCCACGCGguggaGCCGCCaccgcgagcucGGGCUCaggCCCAa- -3'
miRNA:   3'- -GGGUGCGC-----CGGCGG-----------UCCGAG---GGGUgu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.