miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18273 3' -58.4 NC_004681.1 + 64814 0.69 0.418229
Target:  5'- -uUCCAGGUGgGCGGAcccaCCAGCGUCa -3'
miRNA:   3'- acGGGUCUAUgCGCCUcc--GGUCGUAG- -5'
18273 3' -58.4 NC_004681.1 + 17935 0.75 0.192339
Target:  5'- cGCCCGGGUugGU-GAGGCCGGUg-- -3'
miRNA:   3'- aCGGGUCUAugCGcCUCCGGUCGuag -5'
18273 3' -58.4 NC_004681.1 + 20625 0.72 0.288344
Target:  5'- uUGUaCGGGUcuGCGCGGAGGCguGCGUg -3'
miRNA:   3'- -ACGgGUCUA--UGCGCCUCCGguCGUAg -5'
18273 3' -58.4 NC_004681.1 + 23778 0.71 0.310072
Target:  5'- aUGUCCgcGGAggcggGCGCguaGGAGGCCAGC-UCg -3'
miRNA:   3'- -ACGGG--UCUa----UGCG---CCUCCGGUCGuAG- -5'
18273 3' -58.4 NC_004681.1 + 26337 0.71 0.317586
Target:  5'- aUGCCCcaccGCGUaGGGGGCgGGCAUCg -3'
miRNA:   3'- -ACGGGucuaUGCG-CCUCCGgUCGUAG- -5'
18273 3' -58.4 NC_004681.1 + 39038 0.71 0.333024
Target:  5'- aGCCgCAGAUGCaCGGuGGCCGGUu-- -3'
miRNA:   3'- aCGG-GUCUAUGcGCCuCCGGUCGuag -5'
18273 3' -58.4 NC_004681.1 + 36888 0.7 0.357198
Target:  5'- cUGCCUAGucaGCGgGGggcGGGCCAGCGg- -3'
miRNA:   3'- -ACGGGUCua-UGCgCC---UCCGGUCGUag -5'
18273 3' -58.4 NC_004681.1 + 61300 0.69 0.40015
Target:  5'- cGCgCCAGAUGgugcaGCGGAGGaaugUGGCGUCg -3'
miRNA:   3'- aCG-GGUCUAUg----CGCCUCCg---GUCGUAG- -5'
18273 3' -58.4 NC_004681.1 + 52969 0.69 0.40015
Target:  5'- gGCUCGGGcACGCGGGcaggccgauGGCCAGCc-- -3'
miRNA:   3'- aCGGGUCUaUGCGCCU---------CCGGUCGuag -5'
18273 3' -58.4 NC_004681.1 + 4170 0.75 0.177797
Target:  5'- aGCgCgGGGUugGCGuGGGGCCAGCAc- -3'
miRNA:   3'- aCG-GgUCUAugCGC-CUCCGGUCGUag -5'
18273 3' -58.4 NC_004681.1 + 8083 0.75 0.173171
Target:  5'- aGUCCAGAgaaacugGCGCGaAGGCgAGCAUCu -3'
miRNA:   3'- aCGGGUCUa------UGCGCcUCCGgUCGUAG- -5'
18273 3' -58.4 NC_004681.1 + 42128 0.76 0.143701
Target:  5'- cUGCUCAGGUugGCGcgcacGAGGUUGGCGUCg -3'
miRNA:   3'- -ACGGGUCUAugCGC-----CUCCGGUCGUAG- -5'
18273 3' -58.4 NC_004681.1 + 5900 0.69 0.418229
Target:  5'- aGUaCCAGGUugG-GGcGGCCAGCGUUc -3'
miRNA:   3'- aCG-GGUCUAugCgCCuCCGGUCGUAG- -5'
18273 3' -58.4 NC_004681.1 + 65993 0.68 0.495179
Target:  5'- cGCCCAGGaucAUGCGcGAGGaCCAGUc-- -3'
miRNA:   3'- aCGGGUCUa--UGCGC-CUCC-GGUCGuag -5'
18273 3' -58.4 NC_004681.1 + 10280 0.68 0.465513
Target:  5'- -aCUCGGAgcCGgGGAGGCCGGUcguGUCg -3'
miRNA:   3'- acGGGUCUauGCgCCUCCGGUCG---UAG- -5'
18273 3' -58.4 NC_004681.1 + 73277 0.68 0.485192
Target:  5'- gUGCCgGGAggUGCGCggcuGGAGuGCCAGUAc- -3'
miRNA:   3'- -ACGGgUCU--AUGCG----CCUC-CGGUCGUag -5'
18273 3' -58.4 NC_004681.1 + 26442 0.67 0.505258
Target:  5'- gUGCCCAcaccacuUAUGCaGGucGGUCAGCGUCg -3'
miRNA:   3'- -ACGGGUcu-----AUGCG-CCu-CCGGUCGUAG- -5'
18273 3' -58.4 NC_004681.1 + 19238 0.66 0.620529
Target:  5'- uUGCCCAGcuuCuuGGGGGuCCAGgCGUCc -3'
miRNA:   3'- -ACGGGUCuauGcgCCUCC-GGUC-GUAG- -5'
18273 3' -58.4 NC_004681.1 + 543 0.68 0.475302
Target:  5'- cGgCCAGGUuggacgcccaGCGGAGGCCcuCGUCg -3'
miRNA:   3'- aCgGGUCUAug--------CGCCUCCGGucGUAG- -5'
18273 3' -58.4 NC_004681.1 + 16095 1.09 0.000601
Target:  5'- aUGCCCAGAUACGCGGAGGCCAGCAUCu -3'
miRNA:   3'- -ACGGGUCUAUGCGCCUCCGGUCGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.