miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18273 5' -53.7 NC_004681.1 + 2206 0.69 0.760202
Target:  5'- gGGGGUGGCcagUACCCCGugggcaucuucgugGAccUGAGCGAc -3'
miRNA:   3'- -CCCUACCGcu-GUGGGGC--------------UU--ACUUGCU- -5'
18273 5' -53.7 NC_004681.1 + 6356 0.71 0.626547
Target:  5'- cGGGGUGGCGACA-CCgGAGUuGACc- -3'
miRNA:   3'- -CCCUACCGCUGUgGGgCUUAcUUGcu -5'
18273 5' -53.7 NC_004681.1 + 6631 0.69 0.76718
Target:  5'- gGGGGUGGCuucugcaugaGGCGccgcggcucggucuuCCCCGAGUccgugGAGCGAu -3'
miRNA:   3'- -CCCUACCG----------CUGU---------------GGGGCUUA-----CUUGCU- -5'
18273 5' -53.7 NC_004681.1 + 9448 0.66 0.878378
Target:  5'- cGGGGUGGUgacaaccggGACGCCCCaGAUGuucuuGCc- -3'
miRNA:   3'- -CCCUACCG---------CUGUGGGGcUUACu----UGcu -5'
18273 5' -53.7 NC_004681.1 + 12661 0.66 0.890762
Target:  5'- uGGAUGGgGGCACCCCcaucaccgccgcgGAGCu- -3'
miRNA:   3'- cCCUACCgCUGUGGGGcuua---------CUUGcu -5'
18273 5' -53.7 NC_004681.1 + 13872 0.69 0.722383
Target:  5'- -uGAaGGCGACugguCCCCGGAUGAguACGc -3'
miRNA:   3'- ccCUaCCGCUGu---GGGGCUUACU--UGCu -5'
18273 5' -53.7 NC_004681.1 + 14644 0.67 0.83715
Target:  5'- uGGcGGUGGCGGCgaugccgACCCCGuugagGAuCGAc -3'
miRNA:   3'- -CC-CUACCGCUG-------UGGGGCuua--CUuGCU- -5'
18273 5' -53.7 NC_004681.1 + 16060 0.99 0.011493
Target:  5'- gGGGAUGGC-ACACCCCGAAUGAACGAg -3'
miRNA:   3'- -CCCUACCGcUGUGGGGCUUACUUGCU- -5'
18273 5' -53.7 NC_004681.1 + 16178 0.72 0.58365
Target:  5'- -cGGUGGUGACGCCaCCGA--GGGCGGc -3'
miRNA:   3'- ccCUACCGCUGUGG-GGCUuaCUUGCU- -5'
18273 5' -53.7 NC_004681.1 + 16782 0.67 0.838013
Target:  5'- cGGugccUGGCGGCAuCCCCGGcAUGccCGAg -3'
miRNA:   3'- cCCu---ACCGCUGU-GGGGCU-UACuuGCU- -5'
18273 5' -53.7 NC_004681.1 + 19072 0.68 0.801962
Target:  5'- gGGuGAUGGgGGCuugcacGCCCCGAAcucuUGGAgGAc -3'
miRNA:   3'- -CC-CUACCgCUG------UGGGGCUU----ACUUgCU- -5'
18273 5' -53.7 NC_004681.1 + 19178 0.69 0.741984
Target:  5'- uGGGUGGUGACgccggauGCCUCGAcaGUGAAguCGAg -3'
miRNA:   3'- cCCUACCGCUG-------UGGGGCU--UACUU--GCU- -5'
18273 5' -53.7 NC_004681.1 + 24888 0.71 0.637304
Target:  5'- uGGcGAgGGCGGCgACCCCGGcaaGUGGGCa- -3'
miRNA:   3'- -CC-CUaCCGCUG-UGGGGCU---UACUUGcu -5'
18273 5' -53.7 NC_004681.1 + 25852 0.68 0.78288
Target:  5'- cGGGGUcaGCGGCACgCCCG--UGGugGAg -3'
miRNA:   3'- -CCCUAc-CGCUGUG-GGGCuuACUugCU- -5'
18273 5' -53.7 NC_004681.1 + 27430 0.66 0.876119
Target:  5'- gGGGgcGGUGugACCUCGAugucgugcgccacgGUGAuguucaccGCGAu -3'
miRNA:   3'- -CCCuaCCGCugUGGGGCU--------------UACU--------UGCU- -5'
18273 5' -53.7 NC_004681.1 + 31451 0.67 0.829289
Target:  5'- -uGGUGaGCGAUcuuCCCCGggUaGGACGGa -3'
miRNA:   3'- ccCUAC-CGCUGu--GGGGCuuA-CUUGCU- -5'
18273 5' -53.7 NC_004681.1 + 34618 0.66 0.899744
Target:  5'- gGGGAU-GCGGC-CCuuGggUGAcACGu -3'
miRNA:   3'- -CCCUAcCGCUGuGGggCuuACU-UGCu -5'
18273 5' -53.7 NC_004681.1 + 35342 0.83 0.136873
Target:  5'- cGGGAUGGagcgaGGCGCCCCGAGaagucGAGCGAc -3'
miRNA:   3'- -CCCUACCg----CUGUGGGGCUUa----CUUGCU- -5'
18273 5' -53.7 NC_004681.1 + 35904 0.67 0.829289
Target:  5'- cGGAucguccUGGCcGCGCCCCGcAAUGGagucggACGAa -3'
miRNA:   3'- cCCU------ACCGcUGUGGGGC-UUACU------UGCU- -5'
18273 5' -53.7 NC_004681.1 + 42408 0.67 0.862914
Target:  5'- gGGGAUGGUgagcuugacGAUGCuCCCGAGcUGGGCc- -3'
miRNA:   3'- -CCCUACCG---------CUGUG-GGGCUU-ACUUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.