miRNA display CGI


Results 1 - 20 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18273 5' -53.7 NC_004681.1 + 64939 0.74 0.450704
Target:  5'- -aGGUGGCGACGCgCCUGGAgcUGGACGu -3'
miRNA:   3'- ccCUACCGCUGUG-GGGCUU--ACUUGCu -5'
18273 5' -53.7 NC_004681.1 + 50143 0.66 0.899744
Target:  5'- -cGAcGGCGGCAUCuCCGuccaagucggcaAAUGAGCGAc -3'
miRNA:   3'- ccCUaCCGCUGUGG-GGC------------UUACUUGCU- -5'
18273 5' -53.7 NC_004681.1 + 48767 0.66 0.899744
Target:  5'- aGGAcGGCGgcuACACCUgGAGUGAGgccguCGAg -3'
miRNA:   3'- cCCUaCCGC---UGUGGGgCUUACUU-----GCU- -5'
18273 5' -53.7 NC_004681.1 + 34618 0.66 0.899744
Target:  5'- gGGGAU-GCGGC-CCuuGggUGAcACGu -3'
miRNA:   3'- -CCCUAcCGCUGuGGggCuuACU-UGCu -5'
18273 5' -53.7 NC_004681.1 + 51703 0.66 0.892873
Target:  5'- cGGGcgGGgGAUucuCCCCGGG-GAACc- -3'
miRNA:   3'- -CCCuaCCgCUGu--GGGGCUUaCUUGcu -5'
18273 5' -53.7 NC_004681.1 + 12661 0.66 0.890762
Target:  5'- uGGAUGGgGGCACCCCcaucaccgccgcgGAGCu- -3'
miRNA:   3'- cCCUACCgCUGUGGGGcuua---------CUUGcu -5'
18273 5' -53.7 NC_004681.1 + 59013 0.66 0.870764
Target:  5'- gGGGAgGGCGccCACCgCGAAuuUGAccACGAc -3'
miRNA:   3'- -CCCUaCCGCu-GUGGgGCUU--ACU--UGCU- -5'
18273 5' -53.7 NC_004681.1 + 45250 0.67 0.845689
Target:  5'- aGGGGcaggugcucgUGGCagcaccgGACGCCCCGcccGUGAccgGCGAa -3'
miRNA:   3'- -CCCU----------ACCG-------CUGUGGGGCu--UACU---UGCU- -5'
18273 5' -53.7 NC_004681.1 + 16782 0.67 0.838013
Target:  5'- cGGugccUGGCGGCAuCCCCGGcAUGccCGAg -3'
miRNA:   3'- cCCu---ACCGCUGU-GGGGCU-UACuuGCU- -5'
18273 5' -53.7 NC_004681.1 + 60495 0.67 0.832803
Target:  5'- cGGGAuuagUGGCGGCAauggcggucacaucuUCCCGAccGAgACGGg -3'
miRNA:   3'- -CCCU----ACCGCUGU---------------GGGGCUuaCU-UGCU- -5'
18273 5' -53.7 NC_004681.1 + 62101 0.67 0.820366
Target:  5'- ----gGGCGGCAUCCUGcugcagucGGUGGACGAg -3'
miRNA:   3'- cccuaCCGCUGUGGGGC--------UUACUUGCU- -5'
18273 5' -53.7 NC_004681.1 + 13872 0.69 0.722383
Target:  5'- -uGAaGGCGACugguCCCCGGAUGAguACGc -3'
miRNA:   3'- ccCUaCCGCUGu---GGGGCUUACU--UGCu -5'
18273 5' -53.7 NC_004681.1 + 24888 0.71 0.637304
Target:  5'- uGGcGAgGGCGGCgACCCCGGcaaGUGGGCa- -3'
miRNA:   3'- -CC-CUaCCGCUG-UGGGGCU---UACUUGcu -5'
18273 5' -53.7 NC_004681.1 + 51119 0.74 0.460383
Target:  5'- uGGGGUGaagcaGUGAagGCCCUGAGUGAAUGAg -3'
miRNA:   3'- -CCCUAC-----CGCUg-UGGGGCUUACUUGCU- -5'
18273 5' -53.7 NC_004681.1 + 19178 0.69 0.741984
Target:  5'- uGGGUGGUGACgccggauGCCUCGAcaGUGAAguCGAg -3'
miRNA:   3'- cCCUACCGCUG-------UGGGGCU--UACUU--GCU- -5'
18273 5' -53.7 NC_004681.1 + 6356 0.71 0.626547
Target:  5'- cGGGGUGGCGACA-CCgGAGUuGACc- -3'
miRNA:   3'- -CCCUACCGCUGUgGGgCUUAcUUGcu -5'
18273 5' -53.7 NC_004681.1 + 50554 0.72 0.594337
Target:  5'- cGGGGUGgGCGuCGCCCaCGAcGUGGuagACGAg -3'
miRNA:   3'- -CCCUAC-CGCuGUGGG-GCU-UACU---UGCU- -5'
18273 5' -53.7 NC_004681.1 + 16178 0.72 0.58365
Target:  5'- -cGGUGGUGACGCCaCCGA--GGGCGGc -3'
miRNA:   3'- ccCUACCGCUGUGG-GGCUuaCUUGCU- -5'
18273 5' -53.7 NC_004681.1 + 35342 0.83 0.136873
Target:  5'- cGGGAUGGagcgaGGCGCCCCGAGaagucGAGCGAc -3'
miRNA:   3'- -CCCUACCg----CUGUGGGGCUUa----CUUGCU- -5'
18273 5' -53.7 NC_004681.1 + 9448 0.66 0.878378
Target:  5'- cGGGGUGGUgacaaccggGACGCCCCaGAUGuucuuGCc- -3'
miRNA:   3'- -CCCUACCG---------CUGUGGGGcUUACu----UGcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.