miRNA display CGI

Results 21 - 27 of 27 are showing below:
Show page: 1 2

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
18274	3'	-55.7	NC_004681.1	+	21225	0.69	0.597241
	Target:  5'- -gGGGACCACCAcaaUGGGcgUCAUgAGCg- -3' miRNA:   3'- ggCUCUGGUGGU---ACCC--AGUAgUCGgu -5'
18274	3'	-55.7	NC_004681.1	+	49325	0.71	0.513514
	Target:  5'- gCCGGuGACCAagacgaCGcGGGUCAcuUCAGCCGu -3' miRNA:   3'- -GGCU-CUGGUg-----GUaCCCAGU--AGUCGGU- -5'
18274	3'	-55.7	NC_004681.1	+	28752	0.72	0.434985
	Target:  5'- uUGAGACCgACCGUGGGUCcgauaguUCcGCCu -3' miRNA:   3'- gGCUCUGG-UGGUACCCAGu------AGuCGGu -5'
18274	3'	-55.7	NC_004681.1	+	15914	0.72	0.416451
	Target:  5'- aCCGAG-CCACUGUGcgacguugcggaGGcCGUCAGCCAu -3' miRNA:   3'- -GGCUCuGGUGGUAC------------CCaGUAGUCGGU- -5'
18274	3'	-55.7	NC_004681.1	+	62571	0.8	0.142835
	Target:  5'- uUCGuAGACCACCGUgGGGUCGugccccUCGGCCAu -3' miRNA:   3'- -GGC-UCUGGUGGUA-CCCAGU------AGUCGGU- -5'
18274	3'	-55.7	NC_004681.1	+	16534	1.1	0.001127
	Target:  5'- gCCGAGACCACCAUGGGUCAUCAGCCAg -3' miRNA:   3'- -GGCUCUGGUGGUACCCAGUAGUCGGU- -5'
18274	3'	-55.7	NC_004681.1	+	1419	0.66	0.802644
	Target:  5'- uUGAGGCaGCCcuUGucggcgaGGUCGUCGGCCAg -3' miRNA:   3'- gGCUCUGgUGGu-AC-------CCAGUAGUCGGU- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home