Results 41 - 60 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18275 | 3' | -54.9 | NC_004681.1 | + | 7381 | 0.69 | 0.666955 |
Target: 5'- gCUCGUC-GCAGGCgGCGcACU-CGGCg -3' miRNA: 3'- -GAGCAGcCGUUCGaCGUaUGGuGCCG- -5' |
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18275 | 3' | -54.9 | NC_004681.1 | + | 27134 | 0.69 | 0.666955 |
Target: 5'- gCUCGUCcuGCAAGCguucucgGCGgGCUACGGg -3' miRNA: 3'- -GAGCAGc-CGUUCGa------CGUaUGGUGCCg -5' |
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18275 | 3' | -54.9 | NC_004681.1 | + | 42526 | 0.69 | 0.666955 |
Target: 5'- --gGUCGuGCAGGCUGCGcGCCgacgagACGGg -3' miRNA: 3'- gagCAGC-CGUUCGACGUaUGG------UGCCg -5' |
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18275 | 3' | -54.9 | NC_004681.1 | + | 49621 | 0.69 | 0.656179 |
Target: 5'- -aUGUCGGCAcccUUGUcgACCAUGGCc -3' miRNA: 3'- gaGCAGCCGUuc-GACGuaUGGUGCCG- -5' |
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18275 | 3' | -54.9 | NC_004681.1 | + | 16778 | 0.69 | 0.645382 |
Target: 5'- -aCGUCGGUgccuGGCgGCAUcCC-CGGCa -3' miRNA: 3'- gaGCAGCCGu---UCGaCGUAuGGuGCCG- -5' |
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18275 | 3' | -54.9 | NC_004681.1 | + | 45200 | 0.69 | 0.634572 |
Target: 5'- -gCGUCGGCcccggucuuGAGCgag--ACCGCGGCg -3' miRNA: 3'- gaGCAGCCG---------UUCGacguaUGGUGCCG- -5' |
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18275 | 3' | -54.9 | NC_004681.1 | + | 66282 | 0.69 | 0.633491 |
Target: 5'- cCUCGgaccCGGUAcacccauccGGCUGCAUACCgaccuuccuugugAUGGCc -3' miRNA: 3'- -GAGCa---GCCGU---------UCGACGUAUGG-------------UGCCG- -5' |
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18275 | 3' | -54.9 | NC_004681.1 | + | 24842 | 0.69 | 0.623761 |
Target: 5'- -gCGUCGGCGGcGCggGCGgcgGCCGCcaaGGCu -3' miRNA: 3'- gaGCAGCCGUU-CGa-CGUa--UGGUG---CCG- -5' |
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18275 | 3' | -54.9 | NC_004681.1 | + | 17836 | 0.69 | 0.623761 |
Target: 5'- cCUUGgcgaccUCGGUGuuguGCUGCuugACCGCGGCc -3' miRNA: 3'- -GAGC------AGCCGUu---CGACGua-UGGUGCCG- -5' |
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18275 | 3' | -54.9 | NC_004681.1 | + | 60662 | 0.7 | 0.602169 |
Target: 5'- uUCGUCGGCcAGCgGCccgagGCgUGCGGCg -3' miRNA: 3'- gAGCAGCCGuUCGaCGua---UG-GUGCCG- -5' |
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18275 | 3' | -54.9 | NC_004681.1 | + | 42773 | 0.7 | 0.602169 |
Target: 5'- uCUUGUUGGCcaaGGGCUugGCGguggACCACGGg -3' miRNA: 3'- -GAGCAGCCG---UUCGA--CGUa---UGGUGCCg -5' |
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18275 | 3' | -54.9 | NC_004681.1 | + | 30953 | 0.7 | 0.591406 |
Target: 5'- --gGUCGGCGGGCgGCGUGCCguccuccacgAUGGg -3' miRNA: 3'- gagCAGCCGUUCGaCGUAUGG----------UGCCg -5' |
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18275 | 3' | -54.9 | NC_004681.1 | + | 1396 | 0.7 | 0.591406 |
Target: 5'- gUCGUCGGCcAGCU-CGUcccagacuuCCugGGCg -3' miRNA: 3'- gAGCAGCCGuUCGAcGUAu--------GGugCCG- -5' |
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18275 | 3' | -54.9 | NC_004681.1 | + | 11964 | 0.7 | 0.559346 |
Target: 5'- -aCGUCGGUAcGCUGCGcgcGCCGCGa- -3' miRNA: 3'- gaGCAGCCGUuCGACGUa--UGGUGCcg -5' |
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18275 | 3' | -54.9 | NC_004681.1 | + | 61068 | 0.71 | 0.517417 |
Target: 5'- uCUCGUCGGCAcGCUGaccGCCgaccccgagcuGCGGUu -3' miRNA: 3'- -GAGCAGCCGUuCGACguaUGG-----------UGCCG- -5' |
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18275 | 3' | -54.9 | NC_004681.1 | + | 57336 | 0.71 | 0.517417 |
Target: 5'- -cCG-CcGCAAGCUcGCGUACCGCGGg -3' miRNA: 3'- gaGCaGcCGUUCGA-CGUAUGGUGCCg -5' |
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18275 | 3' | -54.9 | NC_004681.1 | + | 2328 | 0.71 | 0.507125 |
Target: 5'- --gGUCGGCGcccacuuCUGCGUGCCGCGcGCc -3' miRNA: 3'- gagCAGCCGUuc-----GACGUAUGGUGC-CG- -5' |
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18275 | 3' | -54.9 | NC_004681.1 | + | 50931 | 0.72 | 0.486811 |
Target: 5'- cCUCuUCGGCGAGCUGgGUG--GCGGUg -3' miRNA: 3'- -GAGcAGCCGUUCGACgUAUggUGCCG- -5' |
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18275 | 3' | -54.9 | NC_004681.1 | + | 20645 | 0.72 | 0.466891 |
Target: 5'- uUUGUgCGGCGguuGCUGCGUugUACGGg -3' miRNA: 3'- gAGCA-GCCGUu--CGACGUAugGUGCCg -5' |
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18275 | 3' | -54.9 | NC_004681.1 | + | 17703 | 0.72 | 0.45709 |
Target: 5'- gUCGUCcGCGcccgAGCcGCcgAUACCACGGCg -3' miRNA: 3'- gAGCAGcCGU----UCGaCG--UAUGGUGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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