miRNA display CGI


Results 21 - 40 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18275 3' -54.9 NC_004681.1 + 20645 0.72 0.466891
Target:  5'- uUUGUgCGGCGguuGCUGCGUugUACGGg -3'
miRNA:   3'- gAGCA-GCCGUu--CGACGUAugGUGCCg -5'
18275 3' -54.9 NC_004681.1 + 22743 0.68 0.699053
Target:  5'- -aCGUaGGCGAuCUGCuUGCgCGCGGCg -3'
miRNA:   3'- gaGCAgCCGUUcGACGuAUG-GUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 24621 0.66 0.800329
Target:  5'- uCUCGUCuccuuGGCUGCAUcccgcgacaacACCGCGGa -3'
miRNA:   3'- -GAGCAGccgu-UCGACGUA-----------UGGUGCCg -5'
18275 3' -54.9 NC_004681.1 + 24842 0.69 0.623761
Target:  5'- -gCGUCGGCGGcGCggGCGgcgGCCGCcaaGGCu -3'
miRNA:   3'- gaGCAGCCGUU-CGa-CGUa--UGGUG---CCG- -5'
18275 3' -54.9 NC_004681.1 + 25221 0.68 0.688403
Target:  5'- uCUCGUCGuuguacuccaGCGGGgUGgGU-CCGCGGCc -3'
miRNA:   3'- -GAGCAGC----------CGUUCgACgUAuGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 27134 0.69 0.666955
Target:  5'- gCUCGUCcuGCAAGCguucucgGCGgGCUACGGg -3'
miRNA:   3'- -GAGCAGc-CGUUCGa------CGUaUGGUGCCg -5'
18275 3' -54.9 NC_004681.1 + 27752 0.66 0.800329
Target:  5'- uUCGgugacgcgCGGCAgcGGCgGCA-GCgGCGGCg -3'
miRNA:   3'- gAGCa-------GCCGU--UCGaCGUaUGgUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 27929 0.67 0.751151
Target:  5'- cCUCGgCGGCAcggcacGGCUGUGggcAUCACuGGCg -3'
miRNA:   3'- -GAGCaGCCGU------UCGACGUa--UGGUG-CCG- -5'
18275 3' -54.9 NC_004681.1 + 28119 0.66 0.790792
Target:  5'- -cCGUCGGUcuuGCUGCc-ACCGCuGGUa -3'
miRNA:   3'- gaGCAGCCGuu-CGACGuaUGGUG-CCG- -5'
18275 3' -54.9 NC_004681.1 + 28816 0.68 0.6777
Target:  5'- cCUCGUCauauaccgacuGGCAGGCgcagGCAcgggcuCCACGGa -3'
miRNA:   3'- -GAGCAG-----------CCGUUCGa---CGUau----GGUGCCg -5'
18275 3' -54.9 NC_004681.1 + 30074 0.68 0.699053
Target:  5'- -cUGUCGcGCAGGCucagccgcacaUGUGUgacaACCACGGCu -3'
miRNA:   3'- gaGCAGC-CGUUCG-----------ACGUA----UGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 30149 0.66 0.809697
Target:  5'- --gGUCGGgcuCAGGCgGCGcgGCCGCGGa -3'
miRNA:   3'- gagCAGCC---GUUCGaCGUa-UGGUGCCg -5'
18275 3' -54.9 NC_004681.1 + 30423 0.66 0.809697
Target:  5'- -gCGUCGGCAAcccguaUGUGUACgGCGGg -3'
miRNA:   3'- gaGCAGCCGUUcg----ACGUAUGgUGCCg -5'
18275 3' -54.9 NC_004681.1 + 30769 0.67 0.771248
Target:  5'- -aUGgaaGGCGAGCUug--ACCGCGGCg -3'
miRNA:   3'- gaGCag-CCGUUCGAcguaUGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 30953 0.7 0.591406
Target:  5'- --gGUCGGCGGGCgGCGUGCCguccuccacgAUGGg -3'
miRNA:   3'- gagCAGCCGUUCGaCGUAUGG----------UGCCg -5'
18275 3' -54.9 NC_004681.1 + 32026 0.68 0.6777
Target:  5'- -gUGUCGGCAcGGCcgGUGUGauCCugGGCa -3'
miRNA:   3'- gaGCAGCCGU-UCGa-CGUAU--GGugCCG- -5'
18275 3' -54.9 NC_004681.1 + 32103 0.68 0.720156
Target:  5'- gUCGUcacCGGCAuccaGGaaGCGgucACCGCGGCg -3'
miRNA:   3'- gAGCA---GCCGU----UCgaCGUa--UGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 33100 0.74 0.382966
Target:  5'- --gGUCGGCAGGCcGC-UACCGgGGUa -3'
miRNA:   3'- gagCAGCCGUUCGaCGuAUGGUgCCG- -5'
18275 3' -54.9 NC_004681.1 + 39079 0.73 0.400742
Target:  5'- cCUCGUCGGCcacccAGC-GCAUgaacugcuucACCGCGGUc -3'
miRNA:   3'- -GAGCAGCCGu----UCGaCGUA----------UGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 39279 0.66 0.790792
Target:  5'- gUCGagGGCGAGCaucu--CCGCGGCc -3'
miRNA:   3'- gAGCagCCGUUCGacguauGGUGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.