miRNA display CGI


Results 1 - 20 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18275 3' -54.9 NC_004681.1 + 1396 0.7 0.591406
Target:  5'- gUCGUCGGCcAGCU-CGUcccagacuuCCugGGCg -3'
miRNA:   3'- gAGCAGCCGuUCGAcGUAu--------GGugCCG- -5'
18275 3' -54.9 NC_004681.1 + 2328 0.71 0.507125
Target:  5'- --gGUCGGCGcccacuuCUGCGUGCCGCGcGCc -3'
miRNA:   3'- gagCAGCCGUuc-----GACGUAUGGUGC-CG- -5'
18275 3' -54.9 NC_004681.1 + 5748 0.84 0.086449
Target:  5'- gUCGUCGGCGaagcucaccAGCUGCGUGCCcacacCGGCa -3'
miRNA:   3'- gAGCAGCCGU---------UCGACGUAUGGu----GCCG- -5'
18275 3' -54.9 NC_004681.1 + 6414 0.73 0.400742
Target:  5'- aCUCGUCGGCcuucGGGUcauCcgACCGCGGCa -3'
miRNA:   3'- -GAGCAGCCG----UUCGac-GuaUGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 6636 0.68 0.688403
Target:  5'- cCUUGggGGguGGCuucUGCAUgaggcGCCGCGGCu -3'
miRNA:   3'- -GAGCagCCguUCG---ACGUA-----UGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 7381 0.69 0.666955
Target:  5'- gCUCGUC-GCAGGCgGCGcACU-CGGCg -3'
miRNA:   3'- -GAGCAGcCGUUCGaCGUaUGGuGCCG- -5'
18275 3' -54.9 NC_004681.1 + 7465 0.66 0.827884
Target:  5'- uCUCGgccGCGGGCUugGCGggaggcuucGCCGCGGCg -3'
miRNA:   3'- -GAGCagcCGUUCGA--CGUa--------UGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 7701 0.73 0.40891
Target:  5'- aUCGUCGGCGAagucGCggGCGUaggugccAUCACGGCc -3'
miRNA:   3'- gAGCAGCCGUU----CGa-CGUA-------UGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 10231 0.66 0.824308
Target:  5'- gCUCccCGGUucGCUGCGggugaccuacacCCACGGCu -3'
miRNA:   3'- -GAGcaGCCGuuCGACGUau----------GGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 11964 0.7 0.559346
Target:  5'- -aCGUCGGUAcGCUGCGcgcGCCGCGa- -3'
miRNA:   3'- gaGCAGCCGUuCGACGUa--UGGUGCcg -5'
18275 3' -54.9 NC_004681.1 + 12050 0.67 0.771248
Target:  5'- uCUCcagCGGCAGGUUGU--ACCGCaGGUa -3'
miRNA:   3'- -GAGca-GCCGUUCGACGuaUGGUG-CCG- -5'
18275 3' -54.9 NC_004681.1 + 12408 0.67 0.781094
Target:  5'- gCUCGUCGGUGAGCcgGUGacggACgaggACGGCg -3'
miRNA:   3'- -GAGCAGCCGUUCGa-CGUa---UGg---UGCCG- -5'
18275 3' -54.9 NC_004681.1 + 13649 0.66 0.797485
Target:  5'- -aCGUCucuucgcccaugauGGCGauGGCggaGCGaACCACGGCg -3'
miRNA:   3'- gaGCAG--------------CCGU--UCGa--CGUaUGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 14483 0.74 0.349021
Target:  5'- -gCGUCGGCGAuGCgGUucuCCGCGGCg -3'
miRNA:   3'- gaGCAGCCGUU-CGaCGuauGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 14547 0.67 0.761264
Target:  5'- --gGUCGGCAucGCcGCcaccgccACCACGGCc -3'
miRNA:   3'- gagCAGCCGUu-CGaCGua-----UGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 16655 1.11 0.001201
Target:  5'- gCUCGUCGGCAAGCUGCAUACCACGGCc -3'
miRNA:   3'- -GAGCAGCCGUUCGACGUAUGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 16778 0.69 0.645382
Target:  5'- -aCGUCGGUgccuGGCgGCAUcCC-CGGCa -3'
miRNA:   3'- gaGCAGCCGu---UCGaCGUAuGGuGCCG- -5'
18275 3' -54.9 NC_004681.1 + 17703 0.72 0.45709
Target:  5'- gUCGUCcGCGcccgAGCcGCcgAUACCACGGCg -3'
miRNA:   3'- gAGCAGcCGU----UCGaCG--UAUGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 17836 0.69 0.623761
Target:  5'- cCUUGgcgaccUCGGUGuuguGCUGCuugACCGCGGCc -3'
miRNA:   3'- -GAGC------AGCCGUu---CGACGua-UGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 18375 0.76 0.294927
Target:  5'- aUCGacaUGGCAGGCcagGCGgcgGCCGCGGCg -3'
miRNA:   3'- gAGCa--GCCGUUCGa--CGUa--UGGUGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.