miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18275 3' -54.9 NC_004681.1 + 46906 0.66 0.789829
Target:  5'- gCUCG-CGGCGAcugguucGCUgGCAcUACCuACGGUg -3'
miRNA:   3'- -GAGCaGCCGUU-------CGA-CGU-AUGG-UGCCG- -5'
18275 3' -54.9 NC_004681.1 + 30074 0.68 0.699053
Target:  5'- -cUGUCGcGCAGGCucagccgcacaUGUGUgacaACCACGGCu -3'
miRNA:   3'- gaGCAGC-CGUUCG-----------ACGUA----UGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 42425 0.68 0.71701
Target:  5'- uCUCGUCGGCGcgcAGcCUGCAcgacccguacuucaUcuACCAcguCGGCg -3'
miRNA:   3'- -GAGCAGCCGU---UC-GACGU--------------A--UGGU---GCCG- -5'
18275 3' -54.9 NC_004681.1 + 32103 0.68 0.720156
Target:  5'- gUCGUcacCGGCAuccaGGaaGCGgucACCGCGGCg -3'
miRNA:   3'- gAGCA---GCCGU----UCgaCGUa--UGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 27929 0.67 0.751151
Target:  5'- cCUCGgCGGCAcggcacGGCUGUGggcAUCACuGGCg -3'
miRNA:   3'- -GAGCaGCCGU------UCGACGUa--UGGUG-CCG- -5'
18275 3' -54.9 NC_004681.1 + 14547 0.67 0.761264
Target:  5'- --gGUCGGCAucGCcGCcaccgccACCACGGCc -3'
miRNA:   3'- gagCAGCCGUu-CGaCGua-----UGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 51009 0.67 0.771248
Target:  5'- -aCGUCGGgGAGCUcuuccacaaggGCGUcaucgcccucgGCgACGGCg -3'
miRNA:   3'- gaGCAGCCgUUCGA-----------CGUA-----------UGgUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 73999 0.67 0.771248
Target:  5'- uCUCGUaGGCAuuGCuUGCAgUGCuCAUGGCc -3'
miRNA:   3'- -GAGCAgCCGUu-CG-ACGU-AUG-GUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 12408 0.67 0.781094
Target:  5'- gCUCGUCGGUGAGCcgGUGacggACgaggACGGCg -3'
miRNA:   3'- -GAGCAGCCGUUCGa-CGUa---UGg---UGCCG- -5'
18275 3' -54.9 NC_004681.1 + 32026 0.68 0.6777
Target:  5'- -gUGUCGGCAcGGCcgGUGUGauCCugGGCa -3'
miRNA:   3'- gaGCAGCCGU-UCGa-CGUAU--GGugCCG- -5'
18275 3' -54.9 NC_004681.1 + 28816 0.68 0.6777
Target:  5'- cCUCGUCauauaccgacuGGCAGGCgcagGCAcgggcuCCACGGa -3'
miRNA:   3'- -GAGCAG-----------CCGUUCGa---CGUau----GGUGCCg -5'
18275 3' -54.9 NC_004681.1 + 27134 0.69 0.666955
Target:  5'- gCUCGUCcuGCAAGCguucucgGCGgGCUACGGg -3'
miRNA:   3'- -GAGCAGc-CGUUCGa------CGUaUGGUGCCg -5'
18275 3' -54.9 NC_004681.1 + 70538 0.74 0.357303
Target:  5'- uUgGUUGGCGcGGUaUGCGUACCGCGGUa -3'
miRNA:   3'- gAgCAGCCGU-UCG-ACGUAUGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 66232 0.73 0.409824
Target:  5'- gUCGcgCGGCAAGCgcaugaaGCAcACCACGGa -3'
miRNA:   3'- gAGCa-GCCGUUCGa------CGUaUGGUGCCg -5'
18275 3' -54.9 NC_004681.1 + 2328 0.71 0.507125
Target:  5'- --gGUCGGCGcccacuuCUGCGUGCCGCGcGCc -3'
miRNA:   3'- gagCAGCCGUuc-----GACGUAUGGUGC-CG- -5'
18275 3' -54.9 NC_004681.1 + 61068 0.71 0.517417
Target:  5'- uCUCGUCGGCAcGCUGaccGCCgaccccgagcuGCGGUu -3'
miRNA:   3'- -GAGCAGCCGUuCGACguaUGG-----------UGCCG- -5'
18275 3' -54.9 NC_004681.1 + 57336 0.71 0.517417
Target:  5'- -cCG-CcGCAAGCUcGCGUACCGCGGg -3'
miRNA:   3'- gaGCaGcCGUUCGA-CGUAUGGUGCCg -5'
18275 3' -54.9 NC_004681.1 + 24842 0.69 0.623761
Target:  5'- -gCGUCGGCGGcGCggGCGgcgGCCGCcaaGGCu -3'
miRNA:   3'- gaGCAGCCGUU-CGa-CGUa--UGGUG---CCG- -5'
18275 3' -54.9 NC_004681.1 + 66282 0.69 0.633491
Target:  5'- cCUCGgaccCGGUAcacccauccGGCUGCAUACCgaccuuccuugugAUGGCc -3'
miRNA:   3'- -GAGCa---GCCGU---------UCGACGUAUGG-------------UGCCG- -5'
18275 3' -54.9 NC_004681.1 + 16778 0.69 0.645382
Target:  5'- -aCGUCGGUgccuGGCgGCAUcCC-CGGCa -3'
miRNA:   3'- gaGCAGCCGu---UCGaCGUAuGGuGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.