miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18275 3' -54.9 NC_004681.1 + 16655 1.11 0.001201
Target:  5'- gCUCGUCGGCAAGCUGCAUACCACGGCc -3'
miRNA:   3'- -GAGCAGCCGUUCGACGUAUGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 5748 0.84 0.086449
Target:  5'- gUCGUCGGCGaagcucaccAGCUGCGUGCCcacacCGGCa -3'
miRNA:   3'- gAGCAGCCGU---------UCGACGUAUGGu----GCCG- -5'
18275 3' -54.9 NC_004681.1 + 18375 0.76 0.294927
Target:  5'- aUCGacaUGGCAGGCcagGCGgcgGCCGCGGCg -3'
miRNA:   3'- gAGCa--GCCGUUCGa--CGUa--UGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 14483 0.74 0.349021
Target:  5'- -gCGUCGGCGAuGCgGUucuCCGCGGCg -3'
miRNA:   3'- gaGCAGCCGUU-CGaCGuauGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 70538 0.74 0.357303
Target:  5'- uUgGUUGGCGcGGUaUGCGUACCGCGGUa -3'
miRNA:   3'- gAgCAGCCGU-UCG-ACGUAUGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 33100 0.74 0.382966
Target:  5'- --gGUCGGCAGGCcGC-UACCGgGGUa -3'
miRNA:   3'- gagCAGCCGUUCGaCGuAUGGUgCCG- -5'
18275 3' -54.9 NC_004681.1 + 6414 0.73 0.400742
Target:  5'- aCUCGUCGGCcuucGGGUcauCcgACCGCGGCa -3'
miRNA:   3'- -GAGCAGCCG----UUCGac-GuaUGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 39079 0.73 0.400742
Target:  5'- cCUCGUCGGCcacccAGC-GCAUgaacugcuucACCGCGGUc -3'
miRNA:   3'- -GAGCAGCCGu----UCGaCGUA----------UGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 7701 0.73 0.40891
Target:  5'- aUCGUCGGCGAagucGCggGCGUaggugccAUCACGGCc -3'
miRNA:   3'- gAGCAGCCGUU----CGa-CGUA-------UGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 66232 0.73 0.409824
Target:  5'- gUCGcgCGGCAAGCgcaugaaGCAcACCACGGa -3'
miRNA:   3'- gAGCa-GCCGUUCGa------CGUaUGGUGCCg -5'
18275 3' -54.9 NC_004681.1 + 40595 0.73 0.432137
Target:  5'- -aCGUCGGgCAcgauugcuacaucguGGCgGCGUcgGCCGCGGCg -3'
miRNA:   3'- gaGCAGCC-GU---------------UCGaCGUA--UGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 17703 0.72 0.45709
Target:  5'- gUCGUCcGCGcccgAGCcGCcgAUACCACGGCg -3'
miRNA:   3'- gAGCAGcCGU----UCGaCG--UAUGGUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 20645 0.72 0.466891
Target:  5'- uUUGUgCGGCGguuGCUGCGUugUACGGg -3'
miRNA:   3'- gAGCA-GCCGUu--CGACGUAugGUGCCg -5'
18275 3' -54.9 NC_004681.1 + 50931 0.72 0.486811
Target:  5'- cCUCuUCGGCGAGCUGgGUG--GCGGUg -3'
miRNA:   3'- -GAGcAGCCGUUCGACgUAUggUGCCG- -5'
18275 3' -54.9 NC_004681.1 + 2328 0.71 0.507125
Target:  5'- --gGUCGGCGcccacuuCUGCGUGCCGCGcGCc -3'
miRNA:   3'- gagCAGCCGUuc-----GACGUAUGGUGC-CG- -5'
18275 3' -54.9 NC_004681.1 + 57336 0.71 0.517417
Target:  5'- -cCG-CcGCAAGCUcGCGUACCGCGGg -3'
miRNA:   3'- gaGCaGcCGUUCGA-CGUAUGGUGCCg -5'
18275 3' -54.9 NC_004681.1 + 61068 0.71 0.517417
Target:  5'- uCUCGUCGGCAcGCUGaccGCCgaccccgagcuGCGGUu -3'
miRNA:   3'- -GAGCAGCCGUuCGACguaUGG-----------UGCCG- -5'
18275 3' -54.9 NC_004681.1 + 11964 0.7 0.559346
Target:  5'- -aCGUCGGUAcGCUGCGcgcGCCGCGa- -3'
miRNA:   3'- gaGCAGCCGUuCGACGUa--UGGUGCcg -5'
18275 3' -54.9 NC_004681.1 + 30953 0.7 0.591406
Target:  5'- --gGUCGGCGGGCgGCGUGCCguccuccacgAUGGg -3'
miRNA:   3'- gagCAGCCGUUCGaCGUAUGG----------UGCCg -5'
18275 3' -54.9 NC_004681.1 + 1396 0.7 0.591406
Target:  5'- gUCGUCGGCcAGCU-CGUcccagacuuCCugGGCg -3'
miRNA:   3'- gAGCAGCCGuUCGAcGUAu--------GGugCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.