Results 21 - 30 of 30 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 18276 | 5' | -55.7 | NC_004681.1 | + | 45572 | 0.67 | 0.673899 |
|
Target: 5'- gAUCAGGguGGCCaGCuCGGAguGGAc-- -3' miRNA: 3'- -UGGUUCguCCGG-CG-GCUUguCCUaaa -5' |
|||||||
| 18276 | 5' | -55.7 | NC_004681.1 | + | 49895 | 0.67 | 0.680424 |
|
Target: 5'- uACCAGGCAGGCaagcacuacucaCCGAAgAGGGa-- -3' miRNA: 3'- -UGGUUCGUCCGgc----------GGCUUgUCCUaaa -5' |
|||||||
| 18276 | 5' | -55.7 | NC_004681.1 | + | 17385 | 0.66 | 0.695582 |
|
Target: 5'- cGCC-AGCAGGgCGUCGucucCGGGAUa- -3' miRNA: 3'- -UGGuUCGUCCgGCGGCuu--GUCCUAaa -5' |
|||||||
| 18276 | 5' | -55.7 | NC_004681.1 | + | 5283 | 0.66 | 0.706337 |
|
Target: 5'- gGCCAuGGCGGG-CG-CGGACAGGGUc- -3' miRNA: 3'- -UGGU-UCGUCCgGCgGCUUGUCCUAaa -5' |
|||||||
| 18276 | 5' | -55.7 | NC_004681.1 | + | 14411 | 0.66 | 0.706337 |
|
Target: 5'- aGCgCAAGCAGGCgGCCGA--GGcGAa-- -3' miRNA: 3'- -UG-GUUCGUCCGgCGGCUugUC-CUaaa -5' |
|||||||
| 18276 | 5' | -55.7 | NC_004681.1 | + | 70948 | 0.66 | 0.715955 |
|
Target: 5'- gGCUgAGGCAugcucgcGGCCGCUGAGCGuGGAg-- -3' miRNA: 3'- -UGG-UUCGU-------CCGGCGGCUUGU-CCUaaa -5' |
|||||||
| 18276 | 5' | -55.7 | NC_004681.1 | + | 46541 | 0.66 | 0.723391 |
|
Target: 5'- uACCgGAGCAGGCCGCgGGAaccugcgcgguuGGGUg- -3' miRNA: 3'- -UGG-UUCGUCCGGCGgCUUgu----------CCUAaa -5' |
|||||||
| 18276 | 5' | -55.7 | NC_004681.1 | + | 50991 | 0.66 | 0.738126 |
|
Target: 5'- uCCGacucgaguauuGGCAGGCCGCCugcuuguCGGGGUa- -3' miRNA: 3'- uGGU-----------UCGUCCGGCGGcuu----GUCCUAaa -5' |
|||||||
| 18276 | 5' | -55.7 | NC_004681.1 | + | 39414 | 0.66 | 0.738126 |
|
Target: 5'- uCCAGcGCGGcGCCGCgCGcGCAGGuAUUUg -3' miRNA: 3'- uGGUU-CGUC-CGGCG-GCuUGUCC-UAAA- -5' |
|||||||
| 18276 | 5' | -55.7 | NC_004681.1 | + | 14466 | 0.66 | 0.748525 |
|
Target: 5'- cGCCGcGCGcGCCgccuccGCCGAGCAGGGc-- -3' miRNA: 3'- -UGGUuCGUcCGG------CGGCUUGUCCUaaa -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home