Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18276 | 5' | -55.7 | NC_004681.1 | + | 3007 | 0.67 | 0.637821 |
Target: 5'- cGCCcAGcCAGGCCcccaggauguagggGUCGAGCGGGAg-- -3' miRNA: 3'- -UGGuUC-GUCCGG--------------CGGCUUGUCCUaaa -5' |
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18276 | 5' | -55.7 | NC_004681.1 | + | 62097 | 0.71 | 0.421966 |
Target: 5'- gUCGAGUAGGCCGCgaucugguCGAACAGGu--- -3' miRNA: 3'- uGGUUCGUCCGGCG--------GCUUGUCCuaaa -5' |
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18276 | 5' | -55.7 | NC_004681.1 | + | 9039 | 0.7 | 0.501253 |
Target: 5'- aGCCGgucgaacgcugcAGCAGGCCGuuGAcgcCGGGGUa- -3' miRNA: 3'- -UGGU------------UCGUCCGGCggCUu--GUCCUAaa -5' |
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18276 | 5' | -55.7 | NC_004681.1 | + | 29583 | 0.69 | 0.532661 |
Target: 5'- cACCGAGguGGUC-CCGGugAGGGa-- -3' miRNA: 3'- -UGGUUCguCCGGcGGCUugUCCUaaa -5' |
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18276 | 5' | -55.7 | NC_004681.1 | + | 9082 | 0.69 | 0.532661 |
Target: 5'- gGCCGAGguGG-CGCCGAcaGCgAGGAg-- -3' miRNA: 3'- -UGGUUCguCCgGCGGCU--UG-UCCUaaa -5' |
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18276 | 5' | -55.7 | NC_004681.1 | + | 60136 | 0.69 | 0.553988 |
Target: 5'- uGCCAGGUgcgGGaGCCGCCGAaggcgaGCAGGu--- -3' miRNA: 3'- -UGGUUCG---UC-CGGCGGCU------UGUCCuaaa -5' |
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18276 | 5' | -55.7 | NC_004681.1 | + | 69629 | 0.69 | 0.564747 |
Target: 5'- uCgGGGCAcGGCCGCCGcAGCAGuGAg-- -3' miRNA: 3'- uGgUUCGU-CCGGCGGC-UUGUC-CUaaa -5' |
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18276 | 5' | -55.7 | NC_004681.1 | + | 33113 | 0.69 | 0.564747 |
Target: 5'- uGCCAugucccgaggucGGCAGGCCGCUac-CGGGGUa- -3' miRNA: 3'- -UGGU------------UCGUCCGGCGGcuuGUCCUAaa -5' |
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18276 | 5' | -55.7 | NC_004681.1 | + | 65323 | 0.68 | 0.586419 |
Target: 5'- ---cGGCAGGCCGCUGu-CGGGGUc- -3' miRNA: 3'- ugguUCGUCCGGCGGCuuGUCCUAaa -5' |
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18276 | 5' | -55.7 | NC_004681.1 | + | 20483 | 0.72 | 0.359136 |
Target: 5'- cUCAGGCGGGCCGucuuCCGGcuucgGCGGGAUUg -3' miRNA: 3'- uGGUUCGUCCGGC----GGCU-----UGUCCUAAa -5' |
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18276 | 5' | -55.7 | NC_004681.1 | + | 17236 | 1.05 | 0.002146 |
Target: 5'- gACCAAGCAGGCCGCCGAACAGGAUUUc -3' miRNA: 3'- -UGGUUCGUCCGGCGGCUUGUCCUAAA- -5' |
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18276 | 5' | -55.7 | NC_004681.1 | + | 46541 | 0.66 | 0.723391 |
Target: 5'- uACCgGAGCAGGCCGCgGGAaccugcgcgguuGGGUg- -3' miRNA: 3'- -UGG-UUCGUCCGGCGgCUUgu----------CCUAaa -5' |
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18276 | 5' | -55.7 | NC_004681.1 | + | 65008 | 0.67 | 0.652061 |
Target: 5'- uCCAGGCGGG-CGCC--GCGGGAg-- -3' miRNA: 3'- uGGUUCGUCCgGCGGcuUGUCCUaaa -5' |
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18276 | 5' | -55.7 | NC_004681.1 | + | 50991 | 0.66 | 0.738126 |
Target: 5'- uCCGacucgaguauuGGCAGGCCGCCugcuuguCGGGGUa- -3' miRNA: 3'- uGGU-----------UCGUCCGGCGGcuu----GUCCUAaa -5' |
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18276 | 5' | -55.7 | NC_004681.1 | + | 45572 | 0.67 | 0.673899 |
Target: 5'- gAUCAGGguGGCCaGCuCGGAguGGAc-- -3' miRNA: 3'- -UGGUUCguCCGG-CG-GCUUguCCUaaa -5' |
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18276 | 5' | -55.7 | NC_004681.1 | + | 70948 | 0.66 | 0.715955 |
Target: 5'- gGCUgAGGCAugcucgcGGCCGCUGAGCGuGGAg-- -3' miRNA: 3'- -UGG-UUCGU-------CCGGCGGCUUGU-CCUaaa -5' |
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18276 | 5' | -55.7 | NC_004681.1 | + | 39414 | 0.66 | 0.738126 |
Target: 5'- uCCAGcGCGGcGCCGCgCGcGCAGGuAUUUg -3' miRNA: 3'- uGGUU-CGUC-CGGCG-GCuUGUCC-UAAA- -5' |
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18276 | 5' | -55.7 | NC_004681.1 | + | 17385 | 0.66 | 0.695582 |
Target: 5'- cGCC-AGCAGGgCGUCGucucCGGGAUa- -3' miRNA: 3'- -UGGuUCGUCCgGCGGCuu--GUCCUAaa -5' |
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18276 | 5' | -55.7 | NC_004681.1 | + | 5283 | 0.66 | 0.706337 |
Target: 5'- gGCCAuGGCGGG-CG-CGGACAGGGUc- -3' miRNA: 3'- -UGGU-UCGUCCgGCgGCUUGUCCUAaa -5' |
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18276 | 5' | -55.7 | NC_004681.1 | + | 58752 | 0.68 | 0.586419 |
Target: 5'- gGCCcgcggcGCAGGCgGCCGuggcGCAGGAc-- -3' miRNA: 3'- -UGGuu----CGUCCGgCGGCu---UGUCCUaaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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