miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18280 5' -59.5 NC_004681.1 + 849 0.69 0.349
Target:  5'- -gGGCGGcagggccggguaGGCCGU-CACCAGuCGUCCu -3'
miRNA:   3'- aaUCGCC------------UCGGCGuGUGGUC-GCAGGu -5'
18280 5' -59.5 NC_004681.1 + 892 0.71 0.268084
Target:  5'- -gAGCGGgaAGCCGC-C-CUGGCGUCCGc -3'
miRNA:   3'- aaUCGCC--UCGGCGuGuGGUCGCAGGU- -5'
18280 5' -59.5 NC_004681.1 + 1158 0.67 0.48466
Target:  5'- -gGGCuccaucGGGCCGUACAuccucUCGGCGUCCGc -3'
miRNA:   3'- aaUCGc-----CUCGGCGUGU-----GGUCGCAGGU- -5'
18280 5' -59.5 NC_004681.1 + 3020 0.66 0.535261
Target:  5'- gUGGCGGuGCCGuCGC-CCAGCcaggCCc -3'
miRNA:   3'- aAUCGCCuCGGC-GUGuGGUCGca--GGu -5'
18280 5' -59.5 NC_004681.1 + 3026 0.66 0.55603
Target:  5'- -cAGCGGcaauGCC-CGCACCcGCGgcgCCAa -3'
miRNA:   3'- aaUCGCCu---CGGcGUGUGGuCGCa--GGU- -5'
18280 5' -59.5 NC_004681.1 + 7297 0.75 0.136641
Target:  5'- --uGCGacGAGCUGCACGCCAGCGacguUCCAc -3'
miRNA:   3'- aauCGC--CUCGGCGUGUGGUCGC----AGGU- -5'
18280 5' -59.5 NC_004681.1 + 9626 0.68 0.417965
Target:  5'- -aGGCcgaGGGGCgGUACACCAGCaggCCGa -3'
miRNA:   3'- aaUCG---CCUCGgCGUGUGGUCGca-GGU- -5'
18280 5' -59.5 NC_004681.1 + 13492 0.7 0.302843
Target:  5'- --cGUGGAGCCGCACAagaucaaCGGCGUg-- -3'
miRNA:   3'- aauCGCCUCGGCGUGUg------GUCGCAggu -5'
18280 5' -59.5 NC_004681.1 + 14563 0.75 0.148084
Target:  5'- -cGGCGGAgGCgGCGCGCgCGGCGUUCGc -3'
miRNA:   3'- aaUCGCCU-CGgCGUGUG-GUCGCAGGU- -5'
18280 5' -59.5 NC_004681.1 + 17328 0.71 0.261532
Target:  5'- gUAGCcGuAGCCGUAucCGCCAGCGUUCAu -3'
miRNA:   3'- aAUCGcC-UCGGCGU--GUGGUCGCAGGU- -5'
18280 5' -59.5 NC_004681.1 + 17397 0.67 0.47481
Target:  5'- --cGCGG-GCaCGCGCGCCagcagGGCGUCg- -3'
miRNA:   3'- aauCGCCuCG-GCGUGUGG-----UCGCAGgu -5'
18280 5' -59.5 NC_004681.1 + 17820 0.66 0.535261
Target:  5'- --cGCGGcGGCCGCgcaagGCACCGGCcucaCCAa -3'
miRNA:   3'- aauCGCC-UCGGCG-----UGUGGUCGca--GGU- -5'
18280 5' -59.5 NC_004681.1 + 19520 0.69 0.373889
Target:  5'- ---uCGGuGCCGCagACGCCuGCGUCCu -3'
miRNA:   3'- aaucGCCuCGGCG--UGUGGuCGCAGGu -5'
18280 5' -59.5 NC_004681.1 + 19878 1.05 0.00087
Target:  5'- cUUAGCGGAGCCGCACACCAGCGUCCAc -3'
miRNA:   3'- -AAUCGCCUCGGCGUGUGGUCGCAGGU- -5'
18280 5' -59.5 NC_004681.1 + 22028 0.66 0.504645
Target:  5'- -cAGCGcGAGCgCGCGCaACCAa-GUCCAa -3'
miRNA:   3'- aaUCGC-CUCG-GCGUG-UGGUcgCAGGU- -5'
18280 5' -59.5 NC_004681.1 + 22102 0.66 0.524978
Target:  5'- --uGCaGcGCCGCAuCACCGGCuUCCAg -3'
miRNA:   3'- aauCGcCuCGGCGU-GUGGUCGcAGGU- -5'
18280 5' -59.5 NC_004681.1 + 22509 0.69 0.382449
Target:  5'- --uGCGGAggguuGCCGUccGCggccggggugACCAGCGUCCAc -3'
miRNA:   3'- aauCGCCU-----CGGCG--UG----------UGGUCGCAGGU- -5'
18280 5' -59.5 NC_004681.1 + 22912 0.69 0.36546
Target:  5'- -aGGCGGGGUCGC-C-CCGGCGaugCCGu -3'
miRNA:   3'- aaUCGCCUCGGCGuGuGGUCGCa--GGU- -5'
18280 5' -59.5 NC_004681.1 + 23849 0.67 0.494607
Target:  5'- --uGCGGAGCUGCACuccgACgacuuccucgggCAGCGUCUc -3'
miRNA:   3'- aauCGCCUCGGCGUG----UG------------GUCGCAGGu -5'
18280 5' -59.5 NC_004681.1 + 25303 0.69 0.34097
Target:  5'- -aAGCGGucGCCGCcguUGCCAGCGccgCCAg -3'
miRNA:   3'- aaUCGCCu-CGGCGu--GUGGUCGCa--GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.