miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18280 5' -59.5 NC_004681.1 + 7297 0.75 0.136641
Target:  5'- --uGCGacGAGCUGCACGCCAGCGacguUCCAc -3'
miRNA:   3'- aauCGC--CUCGGCGUGUGGUCGC----AGGU- -5'
18280 5' -59.5 NC_004681.1 + 3026 0.66 0.55603
Target:  5'- -cAGCGGcaauGCC-CGCACCcGCGgcgCCAa -3'
miRNA:   3'- aaUCGCCu---CGGcGUGUGGuCGCa--GGU- -5'
18280 5' -59.5 NC_004681.1 + 62965 0.66 0.545614
Target:  5'- gUGGCGGcGGCgGCGCGagCAGCuuuccGUCCAu -3'
miRNA:   3'- aAUCGCC-UCGgCGUGUg-GUCG-----CAGGU- -5'
18280 5' -59.5 NC_004681.1 + 38796 0.66 0.535261
Target:  5'- --uGCGG-GCCGCGCGCaa--GUCCGc -3'
miRNA:   3'- aauCGCCuCGGCGUGUGgucgCAGGU- -5'
18280 5' -59.5 NC_004681.1 + 17820 0.66 0.535261
Target:  5'- --cGCGGcGGCCGCgcaagGCACCGGCcucaCCAa -3'
miRNA:   3'- aauCGCC-UCGGCG-----UGUGGUCGca--GGU- -5'
18280 5' -59.5 NC_004681.1 + 22102 0.66 0.524978
Target:  5'- --uGCaGcGCCGCAuCACCGGCuUCCAg -3'
miRNA:   3'- aauCGcCuCGGCGU-GUGGUCGcAGGU- -5'
18280 5' -59.5 NC_004681.1 + 66937 0.66 0.514771
Target:  5'- gUGGCGGcccugguGCCGCGCGCCgAGC-UCgAa -3'
miRNA:   3'- aAUCGCCu------CGGCGUGUGG-UCGcAGgU- -5'
18280 5' -59.5 NC_004681.1 + 44699 0.66 0.504645
Target:  5'- -cGGCGGcGUcaCGCGCACCAagcGCGUCa- -3'
miRNA:   3'- aaUCGCCuCG--GCGUGUGGU---CGCAGgu -5'
18280 5' -59.5 NC_004681.1 + 40378 0.66 0.504645
Target:  5'- -cAGCaaGAGCgGCAcCGCCAGCGUggCCGg -3'
miRNA:   3'- aaUCGc-CUCGgCGU-GUGGUCGCA--GGU- -5'
18280 5' -59.5 NC_004681.1 + 892 0.71 0.268084
Target:  5'- -gAGCGGgaAGCCGC-C-CUGGCGUCCGc -3'
miRNA:   3'- aaUCGCC--UCGGCGuGuGGUCGCAGGU- -5'
18280 5' -59.5 NC_004681.1 + 13492 0.7 0.302843
Target:  5'- --cGUGGAGCCGCACAagaucaaCGGCGUg-- -3'
miRNA:   3'- aauCGCCUCGGCGUGUg------GUCGCAggu -5'
18280 5' -59.5 NC_004681.1 + 37661 0.68 0.391138
Target:  5'- --uGCGGGGCCu--CGCCAGCGgCCGc -3'
miRNA:   3'- aauCGCCUCGGcguGUGGUCGCaGGU- -5'
18280 5' -59.5 NC_004681.1 + 40550 0.68 0.399956
Target:  5'- -gAGUGGAGCCaCuCACCgAGCGUCg- -3'
miRNA:   3'- aaUCGCCUCGGcGuGUGG-UCGCAGgu -5'
18280 5' -59.5 NC_004681.1 + 44941 0.68 0.417965
Target:  5'- -cGGUGGAGCCGC-CACC-GCGagCu -3'
miRNA:   3'- aaUCGCCUCGGCGuGUGGuCGCagGu -5'
18280 5' -59.5 NC_004681.1 + 22028 0.66 0.504645
Target:  5'- -cAGCGcGAGCgCGCGCaACCAa-GUCCAa -3'
miRNA:   3'- aaUCGC-CUCG-GCGUG-UGGUcgCAGGU- -5'
18280 5' -59.5 NC_004681.1 + 40473 0.66 0.545614
Target:  5'- cUGGCGGuGCCGCucuUGCUggcGGUGUUCAc -3'
miRNA:   3'- aAUCGCCuCGGCGu--GUGG---UCGCAGGU- -5'
18280 5' -59.5 NC_004681.1 + 14563 0.75 0.148084
Target:  5'- -cGGCGGAgGCgGCGCGCgCGGCGUUCGc -3'
miRNA:   3'- aaUCGCCU-CGgCGUGUG-GUCGCAGGU- -5'
18280 5' -59.5 NC_004681.1 + 17328 0.71 0.261532
Target:  5'- gUAGCcGuAGCCGUAucCGCCAGCGUUCAu -3'
miRNA:   3'- aAUCGcC-UCGGCGU--GUGGUCGCAGGU- -5'
18280 5' -59.5 NC_004681.1 + 25303 0.69 0.34097
Target:  5'- -aAGCGGucGCCGCcguUGCCAGCGccgCCAg -3'
miRNA:   3'- aaUCGCCu-CGGCGu--GUGGUCGCa--GGU- -5'
18280 5' -59.5 NC_004681.1 + 849 0.69 0.349
Target:  5'- -gGGCGGcagggccggguaGGCCGU-CACCAGuCGUCCu -3'
miRNA:   3'- aaUCGCC------------UCGGCGuGUGGUC-GCAGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.