miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18283 3' -65.2 NC_004681.1 + 8894 0.69 0.199499
Target:  5'- gGUGAUGGuCAGGGCGUUgGCGaCCuuGCCg -3'
miRNA:   3'- -UACUGCCcGUCCCGCGGgUGC-GG--CGG- -5'
18283 3' -65.2 NC_004681.1 + 14449 0.69 0.199499
Target:  5'- --cGCGaGGCGGaGGCGaacgCCGCGCgCGCCg -3'
miRNA:   3'- uacUGC-CCGUC-CCGCg---GGUGCG-GCGG- -5'
18283 3' -65.2 NC_004681.1 + 23462 0.69 0.196569
Target:  5'- -aGGCGGGCaGgagguugaccaccucGGGCGCCUgaaGCUGCCg -3'
miRNA:   3'- uaCUGCCCG-U---------------CCCGCGGGug-CGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 44804 0.69 0.189877
Target:  5'- gGUGACGcGCuuGGuGCGCgUgACGCCGCCg -3'
miRNA:   3'- -UACUGCcCGu-CC-CGCG-GgUGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 16477 0.69 0.189877
Target:  5'- gGUGGcCGaGGCAacccacuuGGCGCCCuCGUCGCCa -3'
miRNA:   3'- -UACU-GC-CCGUc-------CCGCGGGuGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 16714 0.69 0.184761
Target:  5'- uAUGACGGGCGGuGGCagcgaugGCaCCGucaaGCUGCCu -3'
miRNA:   3'- -UACUGCCCGUC-CCG-------CG-GGUg---CGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 30925 0.7 0.180666
Target:  5'- gAUGGgucCGGGCAGGuaGgCCCAgGCCGUg -3'
miRNA:   3'- -UACU---GCCCGUCCcgC-GGGUgCGGCGg -5'
18283 3' -65.2 NC_004681.1 + 62124 0.7 0.180666
Target:  5'- -gGACGGuCAGaGGUGuCCCACGgCCGCg -3'
miRNA:   3'- uaCUGCCcGUC-CCGC-GGGUGC-GGCGg -5'
18283 3' -65.2 NC_004681.1 + 565 0.7 0.17621
Target:  5'- aGUGACGgccgcauccccaGGCgaguuccuucAGGGCGCCaucgACGCCGUCg -3'
miRNA:   3'- -UACUGC------------CCG----------UCCCGCGGg---UGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 63077 0.7 0.17621
Target:  5'- gAUGAUGGaCGGaaaGCuGCUCGCGCCGCCg -3'
miRNA:   3'- -UACUGCCcGUCc--CG-CGGGUGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 1186 0.7 0.171852
Target:  5'- -aGAUGGcCuuGaGGCGCUCGCGCUGCCa -3'
miRNA:   3'- uaCUGCCcGu-C-CCGCGGGUGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 16522 0.7 0.167591
Target:  5'- gAUGGCGGGUGGcGGCaacggucCCCACgGCgGCCg -3'
miRNA:   3'- -UACUGCCCGUC-CCGc------GGGUG-CGgCGG- -5'
18283 3' -65.2 NC_004681.1 + 33433 0.7 0.163425
Target:  5'- gAUGuGCGGGC-GGGUGCCCugGaCgGCg -3'
miRNA:   3'- -UAC-UGCCCGuCCCGCGGGugC-GgCGg -5'
18283 3' -65.2 NC_004681.1 + 39244 0.7 0.159352
Target:  5'- -cGcCGcGGCaAGGGCGCCaaggGCCGCCg -3'
miRNA:   3'- uaCuGC-CCG-UCCCGCGGgug-CGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 18067 0.71 0.155371
Target:  5'- aGUGGCcgcauGGGCuGcGGgGCCCACcggaGCCGCCc -3'
miRNA:   3'- -UACUG-----CCCGuC-CCgCGGGUG----CGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 62410 0.71 0.15148
Target:  5'- cUGGCauGGCuGGGCGCCgACaCCGCCc -3'
miRNA:   3'- uACUGc-CCGuCCCGCGGgUGcGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 22277 0.71 0.147678
Target:  5'- cGUGGCGGcGU-GGGCGCCCuGC-CCGUCa -3'
miRNA:   3'- -UACUGCC-CGuCCCGCGGG-UGcGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 62614 0.71 0.143963
Target:  5'- -aGGCGGcugcCAGGGUGCCCAUGgCCuggGCCa -3'
miRNA:   3'- uaCUGCCc---GUCCCGCGGGUGC-GG---CGG- -5'
18283 3' -65.2 NC_004681.1 + 17718 0.71 0.136788
Target:  5'- -cGACGugaacGCGGGGuCGUCCGCGCCcgaGCCg -3'
miRNA:   3'- uaCUGCc----CGUCCC-GCGGGUGCGG---CGG- -5'
18283 3' -65.2 NC_004681.1 + 12762 0.71 0.133325
Target:  5'- -cGGCGGuGaugGGGGUGCCCccauccACGCCGUCa -3'
miRNA:   3'- uaCUGCC-Cg--UCCCGCGGG------UGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.