miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18283 3' -65.2 NC_004681.1 + 16243 0.68 0.236569
Target:  5'- -cGACGGGau-GGcCGCCaGCGCCGCg -3'
miRNA:   3'- uaCUGCCCgucCC-GCGGgUGCGGCGg -5'
18283 3' -65.2 NC_004681.1 + 16477 0.69 0.189877
Target:  5'- gGUGGcCGaGGCAacccacuuGGCGCCCuCGUCGCCa -3'
miRNA:   3'- -UACU-GC-CCGUc-------CCGCGGGuGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 16522 0.7 0.167591
Target:  5'- gAUGGCGGGUGGcGGCaacggucCCCACgGCgGCCg -3'
miRNA:   3'- -UACUGCCCGUC-CCGc------GGGUG-CGgCGG- -5'
18283 3' -65.2 NC_004681.1 + 16714 0.69 0.184761
Target:  5'- uAUGACGGGCGGuGGCagcgaugGCaCCGucaaGCUGCCu -3'
miRNA:   3'- -UACUGCCCGUC-CCG-------CG-GGUg---CGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 17397 0.67 0.285152
Target:  5'- --cGCGGGCAcgcgcgccagcaGGGCGUcgucuccgggauaCC-CGCCGCCc -3'
miRNA:   3'- uacUGCCCGU------------CCCGCG-------------GGuGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 17718 0.71 0.136788
Target:  5'- -cGACGugaacGCGGGGuCGUCCGCGCCcgaGCCg -3'
miRNA:   3'- uaCUGCc----CGUCCC-GCGGGUGCGG---CGG- -5'
18283 3' -65.2 NC_004681.1 + 17952 0.66 0.319064
Target:  5'- -cGA-GGGCGgcuccguGGGCcaccgcaGCCCAUGCgGCCa -3'
miRNA:   3'- uaCUgCCCGU-------CCCG-------CGGGUGCGgCGG- -5'
18283 3' -65.2 NC_004681.1 + 18067 0.71 0.155371
Target:  5'- aGUGGCcgcauGGGCuGcGGgGCCCACcggaGCCGCCc -3'
miRNA:   3'- -UACUG-----CCCGuC-CCgCGGGUG----CGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 18208 0.66 0.306265
Target:  5'- gGUGcCuGGCcgGGGGCGCCgAUGCCggggauGCCg -3'
miRNA:   3'- -UACuGcCCG--UCCCGCGGgUGCGG------CGG- -5'
18283 3' -65.2 NC_004681.1 + 21424 0.66 0.320511
Target:  5'- ---cUGGGCAaGGUGCUgGCGCCGUUc -3'
miRNA:   3'- uacuGCCCGUcCCGCGGgUGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 22277 0.71 0.147678
Target:  5'- cGUGGCGGcGU-GGGCGCCCuGC-CCGUCa -3'
miRNA:   3'- -UACUGCC-CGuCCCGCGGG-UGcGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 22381 1.09 0.00017
Target:  5'- cAUGACGGGCAGGGCGCCCACGCCGCCa -3'
miRNA:   3'- -UACUGCCCGUCCCGCGGGUGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 23462 0.69 0.196569
Target:  5'- -aGGCGGGCaGgagguugaccaccucGGGCGCCUgaaGCUGCCg -3'
miRNA:   3'- uaCUGCCCG-U---------------CCCGCGGGug-CGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 24957 0.74 0.081217
Target:  5'- gGUGAgGGaGCcuuGGcGGCcgccGCCCGCGCCGCCg -3'
miRNA:   3'- -UACUgCC-CG---UC-CCG----CGGGUGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 25173 0.72 0.129943
Target:  5'- -cGAgGaGGCugagcgAGGuGcCGCCCGCGCCGCCc -3'
miRNA:   3'- uaCUgC-CCG------UCC-C-GCGGGUGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 25238 0.69 0.209543
Target:  5'- -cGGCGGcCAuGGCGCCCGCGgCGgCg -3'
miRNA:   3'- uaCUGCCcGUcCCGCGGGUGCgGCgG- -5'
18283 3' -65.2 NC_004681.1 + 27621 0.72 0.114194
Target:  5'- gGUGGCGcuggcGGCGGcGGCgGCUCugGUCGCCg -3'
miRNA:   3'- -UACUGC-----CCGUC-CCG-CGGGugCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 27687 0.67 0.279241
Target:  5'- -gGugGuGGUGGuGGCGCCUACGuuaaCCGCa -3'
miRNA:   3'- uaCugC-CCGUC-CCGCGGGUGC----GGCGg -5'
18283 3' -65.2 NC_004681.1 + 29505 0.66 0.318343
Target:  5'- aGUGACGccagaccacgcgguGGUGGaGGCGCUgAUGuuGCCa -3'
miRNA:   3'- -UACUGC--------------CCGUC-CCGCGGgUGCggCGG- -5'
18283 3' -65.2 NC_004681.1 + 30266 0.66 0.320511
Target:  5'- ---uUGGcGUAGGuccacuccGCGgCCGCGCCGCCu -3'
miRNA:   3'- uacuGCC-CGUCC--------CGCgGGUGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.