miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18283 3' -65.2 NC_004681.1 + 565 0.7 0.17621
Target:  5'- aGUGACGgccgcauccccaGGCgaguuccuucAGGGCGCCaucgACGCCGUCg -3'
miRNA:   3'- -UACUGC------------CCG----------UCCCGCGGg---UGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 1186 0.7 0.171852
Target:  5'- -aGAUGGcCuuGaGGCGCUCGCGCUGCCa -3'
miRNA:   3'- uaCUGCCcGu-C-CCGCGGGUGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 2606 0.67 0.272789
Target:  5'- -aGAUGGGUgacauccaagucGGGGauuaCGUUCACGCCGCg -3'
miRNA:   3'- uaCUGCCCG------------UCCC----GCGGGUGCGGCGg -5'
18283 3' -65.2 NC_004681.1 + 2918 0.66 0.335247
Target:  5'- -gGGCcuGGCuGGGCGacggcaccgCCACGCgCGCCg -3'
miRNA:   3'- uaCUGc-CCGuCCCGCg--------GGUGCG-GCGG- -5'
18283 3' -65.2 NC_004681.1 + 3397 0.67 0.260244
Target:  5'- -aGAaguuGGCcGcGGCGCCCGCGCgaGCCa -3'
miRNA:   3'- uaCUgc--CCGuC-CCGCGGGUGCGg-CGG- -5'
18283 3' -65.2 NC_004681.1 + 5702 0.67 0.25415
Target:  5'- cUGACGGGCuGGaGCGCggCC-UGUCGCUc -3'
miRNA:   3'- uACUGCCCGuCC-CGCG--GGuGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 6457 0.68 0.230939
Target:  5'- ---uCGGGCGuGGCGCCCAaggGCUGCa -3'
miRNA:   3'- uacuGCCCGUcCCGCGGGUg--CGGCGg -5'
18283 3' -65.2 NC_004681.1 + 7260 0.68 0.248173
Target:  5'- -cGACGcGGCcguccaccucGGCGCCgaguGCGCCGCCu -3'
miRNA:   3'- uaCUGC-CCGuc--------CCGCGGg---UGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 7317 0.66 0.306265
Target:  5'- -cGACGuuccacccccGGCacccGGGGCuGaCCC-CGCCGCCg -3'
miRNA:   3'- uaCUGC----------CCG----UCCCG-C-GGGuGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 8894 0.69 0.199499
Target:  5'- gGUGAUGGuCAGGGCGUUgGCGaCCuuGCCg -3'
miRNA:   3'- -UACUGCCcGUCCCGCGGgUGC-GG--CGG- -5'
18283 3' -65.2 NC_004681.1 + 10752 0.66 0.327817
Target:  5'- --cGCGGGCaccgGGGGCGCCagGCaGCgGUCa -3'
miRNA:   3'- uacUGCCCG----UCCCGCGGg-UG-CGgCGG- -5'
18283 3' -65.2 NC_004681.1 + 12296 0.66 0.299326
Target:  5'- -cGGCGcGCGGGGaaGCCCgACGCCGgguCCg -3'
miRNA:   3'- uaCUGCcCGUCCCg-CGGG-UGCGGC---GG- -5'
18283 3' -65.2 NC_004681.1 + 12762 0.71 0.133325
Target:  5'- -cGGCGGuGaugGGGGUGCCCccauccACGCCGUCa -3'
miRNA:   3'- uaCUGCC-Cg--UCCCGCGGG------UGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 13610 0.73 0.111265
Target:  5'- -cGGCGGG-AGGGCaCuCCACGCCGUUg -3'
miRNA:   3'- uaCUGCCCgUCCCGcG-GGUGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 14449 0.69 0.199499
Target:  5'- --cGCGaGGCGGaGGCGaacgCCGCGCgCGCCg -3'
miRNA:   3'- uacUGC-CCGUC-CCGCg---GGUGCG-GCGG- -5'
18283 3' -65.2 NC_004681.1 + 14484 0.69 0.209543
Target:  5'- -cGcCGaGCAGGGCGCgCugGUgGCCg -3'
miRNA:   3'- uaCuGCcCGUCCCGCGgGugCGgCGG- -5'
18283 3' -65.2 NC_004681.1 + 14649 0.66 0.306265
Target:  5'- -cGugGuGGCGGuGGCGgCgAUGCCGaCCc -3'
miRNA:   3'- uaCugC-CCGUC-CCGCgGgUGCGGC-GG- -5'
18283 3' -65.2 NC_004681.1 + 14872 0.76 0.063941
Target:  5'- -gGAUGGcCAGGGCGUCCGCGgCGUCa -3'
miRNA:   3'- uaCUGCCcGUCCCGCGGGUGCgGCGG- -5'
18283 3' -65.2 NC_004681.1 + 16026 0.66 0.306265
Target:  5'- -cGGCugcuGGCaAGGGCGCCgC-CGCUGUCa -3'
miRNA:   3'- uaCUGc---CCG-UCCCGCGG-GuGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 16132 0.68 0.225423
Target:  5'- gGUGACa-GCGGcGGCGCCCuuGCCagcaGCCg -3'
miRNA:   3'- -UACUGccCGUC-CCGCGGGugCGG----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.