miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18283 3' -65.2 NC_004681.1 + 22381 1.09 0.00017
Target:  5'- cAUGACGGGCAGGGCGCCCACGCCGCCa -3'
miRNA:   3'- -UACUGCCCGUCCCGCGGGUGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 45365 0.78 0.040492
Target:  5'- --cACGGGCGGGGCGUCCgguGCUGCCa -3'
miRNA:   3'- uacUGCCCGUCCCGCGGGug-CGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 39353 0.76 0.060614
Target:  5'- uUGACGcGGCGGcccuuGGCGCCCuuGCCGCg -3'
miRNA:   3'- uACUGC-CCGUC-----CCGCGGGugCGGCGg -5'
18283 3' -65.2 NC_004681.1 + 14872 0.76 0.063941
Target:  5'- -gGAUGGcCAGGGCGUCCGCGgCGUCa -3'
miRNA:   3'- uaCUGCCcGUCCCGCGGGUGCgGCGG- -5'
18283 3' -65.2 NC_004681.1 + 59009 0.75 0.075013
Target:  5'- -cGugGGGgAGGGCGCCCA--CCGCg -3'
miRNA:   3'- uaCugCCCgUCCCGCGGGUgcGGCGg -5'
18283 3' -65.2 NC_004681.1 + 24957 0.74 0.081217
Target:  5'- gGUGAgGGaGCcuuGGcGGCcgccGCCCGCGCCGCCg -3'
miRNA:   3'- -UACUgCC-CG---UC-CCG----CGGGUGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 13610 0.73 0.111265
Target:  5'- -cGGCGGG-AGGGCaCuCCACGCCGUUg -3'
miRNA:   3'- uaCUGCCCgUCCCGcG-GGUGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 27621 0.72 0.114194
Target:  5'- gGUGGCGcuggcGGCGGcGGCgGCUCugGUCGCCg -3'
miRNA:   3'- -UACUGC-----CCGUC-CCG-CGGGugCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 60536 0.72 0.120267
Target:  5'- -aGACGGGCcgaAGGGUagUCACGCCGCa -3'
miRNA:   3'- uaCUGCCCG---UCCCGcgGGUGCGGCGg -5'
18283 3' -65.2 NC_004681.1 + 25173 0.72 0.129943
Target:  5'- -cGAgGaGGCugagcgAGGuGcCGCCCGCGCCGCCc -3'
miRNA:   3'- uaCUgC-CCG------UCC-C-GCGGGUGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 12762 0.71 0.133325
Target:  5'- -cGGCGGuGaugGGGGUGCCCccauccACGCCGUCa -3'
miRNA:   3'- uaCUGCC-Cg--UCCCGCGGG------UGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 17718 0.71 0.136788
Target:  5'- -cGACGugaacGCGGGGuCGUCCGCGCCcgaGCCg -3'
miRNA:   3'- uaCUGCc----CGUCCC-GCGGGUGCGG---CGG- -5'
18283 3' -65.2 NC_004681.1 + 62614 0.71 0.143963
Target:  5'- -aGGCGGcugcCAGGGUGCCCAUGgCCuggGCCa -3'
miRNA:   3'- uaCUGCCc---GUCCCGCGGGUGC-GG---CGG- -5'
18283 3' -65.2 NC_004681.1 + 22277 0.71 0.147678
Target:  5'- cGUGGCGGcGU-GGGCGCCCuGC-CCGUCa -3'
miRNA:   3'- -UACUGCC-CGuCCCGCGGG-UGcGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 62410 0.71 0.15148
Target:  5'- cUGGCauGGCuGGGCGCCgACaCCGCCc -3'
miRNA:   3'- uACUGc-CCGuCCCGCGGgUGcGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 18067 0.71 0.155371
Target:  5'- aGUGGCcgcauGGGCuGcGGgGCCCACcggaGCCGCCc -3'
miRNA:   3'- -UACUG-----CCCGuC-CCgCGGGUG----CGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 39244 0.7 0.159352
Target:  5'- -cGcCGcGGCaAGGGCGCCaaggGCCGCCg -3'
miRNA:   3'- uaCuGC-CCG-UCCCGCGGgug-CGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 33433 0.7 0.163425
Target:  5'- gAUGuGCGGGC-GGGUGCCCugGaCgGCg -3'
miRNA:   3'- -UAC-UGCCCGuCCCGCGGGugC-GgCGg -5'
18283 3' -65.2 NC_004681.1 + 16522 0.7 0.167591
Target:  5'- gAUGGCGGGUGGcGGCaacggucCCCACgGCgGCCg -3'
miRNA:   3'- -UACUGCCCGUC-CCGc------GGGUG-CGgCGG- -5'
18283 3' -65.2 NC_004681.1 + 1186 0.7 0.171852
Target:  5'- -aGAUGGcCuuGaGGCGCUCGCGCUGCCa -3'
miRNA:   3'- uaCUGCCcGu-C-CCGCGGGUGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.