miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18283 3' -65.2 NC_004681.1 + 16026 0.66 0.306265
Target:  5'- -cGGCugcuGGCaAGGGCGCCgC-CGCUGUCa -3'
miRNA:   3'- uaCUGc---CCG-UCCCGCGG-GuGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 39840 0.68 0.236569
Target:  5'- --cGCGcGCAccGCGCCCGCGCgCGCCa -3'
miRNA:   3'- uacUGCcCGUccCGCGGGUGCG-GCGG- -5'
18283 3' -65.2 NC_004681.1 + 7260 0.68 0.248173
Target:  5'- -cGACGcGGCcguccaccucGGCGCCgaguGCGCCGCCu -3'
miRNA:   3'- uaCUGC-CCGuc--------CCGCGGg---UGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 5702 0.67 0.25415
Target:  5'- cUGACGGGCuGGaGCGCggCC-UGUCGCUc -3'
miRNA:   3'- uACUGCCCGuCC-CGCG--GGuGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 3397 0.67 0.260244
Target:  5'- -aGAaguuGGCcGcGGCGCCCGCGCgaGCCa -3'
miRNA:   3'- uaCUgc--CCGuC-CCGCGGGUGCGg-CGG- -5'
18283 3' -65.2 NC_004681.1 + 2606 0.67 0.272789
Target:  5'- -aGAUGGGUgacauccaagucGGGGauuaCGUUCACGCCGCg -3'
miRNA:   3'- uaCUGCCCG------------UCCC----GCGGGUGCGGCGg -5'
18283 3' -65.2 NC_004681.1 + 63851 0.67 0.279241
Target:  5'- ---cCGGGC-GGGCcuuGCCuCGCGCCGUg -3'
miRNA:   3'- uacuGCCCGuCCCG---CGG-GUGCGGCGg -5'
18283 3' -65.2 NC_004681.1 + 27687 0.67 0.279241
Target:  5'- -gGugGuGGUGGuGGCGCCUACGuuaaCCGCa -3'
miRNA:   3'- uaCugC-CCGUC-CCGCGGGUGC----GGCGg -5'
18283 3' -65.2 NC_004681.1 + 7317 0.66 0.306265
Target:  5'- -cGACGuuccacccccGGCacccGGGGCuGaCCC-CGCCGCCg -3'
miRNA:   3'- uaCUGC----------CCG----UCCCG-C-GGGuGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 25238 0.69 0.209543
Target:  5'- -cGGCGGcCAuGGCGCCCGCGgCGgCg -3'
miRNA:   3'- uaCUGCCcGUcCCGCGGGUGCgGCgG- -5'
18283 3' -65.2 NC_004681.1 + 14484 0.69 0.209543
Target:  5'- -cGcCGaGCAGGGCGCgCugGUgGCCg -3'
miRNA:   3'- uaCuGCcCGUCCCGCGgGugCGgCGG- -5'
18283 3' -65.2 NC_004681.1 + 14449 0.69 0.199499
Target:  5'- --cGCGaGGCGGaGGCGaacgCCGCGCgCGCCg -3'
miRNA:   3'- uacUGC-CCGUC-CCGCg---GGUGCG-GCGG- -5'
18283 3' -65.2 NC_004681.1 + 27621 0.72 0.114194
Target:  5'- gGUGGCGcuggcGGCGGcGGCgGCUCugGUCGCCg -3'
miRNA:   3'- -UACUGC-----CCGUC-CCG-CGGGugCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 60536 0.72 0.120267
Target:  5'- -aGACGGGCcgaAGGGUagUCACGCCGCa -3'
miRNA:   3'- uaCUGCCCG---UCCCGcgGGUGCGGCGg -5'
18283 3' -65.2 NC_004681.1 + 22277 0.71 0.147678
Target:  5'- cGUGGCGGcGU-GGGCGCCCuGC-CCGUCa -3'
miRNA:   3'- -UACUGCC-CGuCCCGCGGG-UGcGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 62410 0.71 0.15148
Target:  5'- cUGGCauGGCuGGGCGCCgACaCCGCCc -3'
miRNA:   3'- uACUGc-CCGuCCCGCGGgUGcGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 39244 0.7 0.159352
Target:  5'- -cGcCGcGGCaAGGGCGCCaaggGCCGCCg -3'
miRNA:   3'- uaCuGC-CCG-UCCCGCGGgug-CGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 16522 0.7 0.167591
Target:  5'- gAUGGCGGGUGGcGGCaacggucCCCACgGCgGCCg -3'
miRNA:   3'- -UACUGCCCGUC-CCGc------GGGUG-CGgCGG- -5'
18283 3' -65.2 NC_004681.1 + 565 0.7 0.17621
Target:  5'- aGUGACGgccgcauccccaGGCgaguuccuucAGGGCGCCaucgACGCCGUCg -3'
miRNA:   3'- -UACUGC------------CCG----------UCCCGCGGg---UGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 16714 0.69 0.184761
Target:  5'- uAUGACGGGCGGuGGCagcgaugGCaCCGucaaGCUGCCu -3'
miRNA:   3'- -UACUGCCCGUC-CCG-------CG-GGUg---CGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.