Results 21 - 40 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18283 | 3' | -65.2 | NC_004681.1 | + | 39244 | 0.7 | 0.159352 |
Target: 5'- -cGcCGcGGCaAGGGCGCCaaggGCCGCCg -3' miRNA: 3'- uaCuGC-CCG-UCCCGCGGgug-CGGCGG- -5' |
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18283 | 3' | -65.2 | NC_004681.1 | + | 16522 | 0.7 | 0.167591 |
Target: 5'- gAUGGCGGGUGGcGGCaacggucCCCACgGCgGCCg -3' miRNA: 3'- -UACUGCCCGUC-CCGc------GGGUG-CGgCGG- -5' |
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18283 | 3' | -65.2 | NC_004681.1 | + | 565 | 0.7 | 0.17621 |
Target: 5'- aGUGACGgccgcauccccaGGCgaguuccuucAGGGCGCCaucgACGCCGUCg -3' miRNA: 3'- -UACUGC------------CCG----------UCCCGCGGg---UGCGGCGG- -5' |
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18283 | 3' | -65.2 | NC_004681.1 | + | 16714 | 0.69 | 0.184761 |
Target: 5'- uAUGACGGGCGGuGGCagcgaugGCaCCGucaaGCUGCCu -3' miRNA: 3'- -UACUGCCCGUC-CCG-------CG-GGUg---CGGCGG- -5' |
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18283 | 3' | -65.2 | NC_004681.1 | + | 14449 | 0.69 | 0.199499 |
Target: 5'- --cGCGaGGCGGaGGCGaacgCCGCGCgCGCCg -3' miRNA: 3'- uacUGC-CCGUC-CCGCg---GGUGCG-GCGG- -5' |
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18283 | 3' | -65.2 | NC_004681.1 | + | 14484 | 0.69 | 0.209543 |
Target: 5'- -cGcCGaGCAGGGCGCgCugGUgGCCg -3' miRNA: 3'- uaCuGCcCGUCCCGCGgGugCGgCGG- -5' |
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18283 | 3' | -65.2 | NC_004681.1 | + | 25238 | 0.69 | 0.209543 |
Target: 5'- -cGGCGGcCAuGGCGCCCGCGgCGgCg -3' miRNA: 3'- uaCUGCCcGUcCCGCGGGUGCgGCgG- -5' |
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18283 | 3' | -65.2 | NC_004681.1 | + | 17718 | 0.71 | 0.136788 |
Target: 5'- -cGACGugaacGCGGGGuCGUCCGCGCCcgaGCCg -3' miRNA: 3'- uaCUGCc----CGUCCC-GCGGGUGCGG---CGG- -5' |
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18283 | 3' | -65.2 | NC_004681.1 | + | 62614 | 0.71 | 0.143963 |
Target: 5'- -aGGCGGcugcCAGGGUGCCCAUGgCCuggGCCa -3' miRNA: 3'- uaCUGCCc---GUCCCGCGGGUGC-GG---CGG- -5' |
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18283 | 3' | -65.2 | NC_004681.1 | + | 18067 | 0.71 | 0.155371 |
Target: 5'- aGUGGCcgcauGGGCuGcGGgGCCCACcggaGCCGCCc -3' miRNA: 3'- -UACUG-----CCCGuC-CCgCGGGUG----CGGCGG- -5' |
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18283 | 3' | -65.2 | NC_004681.1 | + | 33433 | 0.7 | 0.163425 |
Target: 5'- gAUGuGCGGGC-GGGUGCCCugGaCgGCg -3' miRNA: 3'- -UAC-UGCCCGuCCCGCGGGugC-GgCGg -5' |
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18283 | 3' | -65.2 | NC_004681.1 | + | 1186 | 0.7 | 0.171852 |
Target: 5'- -aGAUGGcCuuGaGGCGCUCGCGCUGCCa -3' miRNA: 3'- uaCUGCCcGu-C-CCGCGGGUGCGGCGG- -5' |
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18283 | 3' | -65.2 | NC_004681.1 | + | 12762 | 0.71 | 0.133325 |
Target: 5'- -cGGCGGuGaugGGGGUGCCCccauccACGCCGUCa -3' miRNA: 3'- uaCUGCC-Cg--UCCCGCGGG------UGCGGCGG- -5' |
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18283 | 3' | -65.2 | NC_004681.1 | + | 25173 | 0.72 | 0.129943 |
Target: 5'- -cGAgGaGGCugagcgAGGuGcCGCCCGCGCCGCCc -3' miRNA: 3'- uaCUgC-CCG------UCC-C-GCGGGUGCGGCGG- -5' |
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18283 | 3' | -65.2 | NC_004681.1 | + | 13610 | 0.73 | 0.111265 |
Target: 5'- -cGGCGGG-AGGGCaCuCCACGCCGUUg -3' miRNA: 3'- uaCUGCCCgUCCCGcG-GGUGCGGCGG- -5' |
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18283 | 3' | -65.2 | NC_004681.1 | + | 24957 | 0.74 | 0.081217 |
Target: 5'- gGUGAgGGaGCcuuGGcGGCcgccGCCCGCGCCGCCg -3' miRNA: 3'- -UACUgCC-CG---UC-CCG----CGGGUGCGGCGG- -5' |
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18283 | 3' | -65.2 | NC_004681.1 | + | 14872 | 0.76 | 0.063941 |
Target: 5'- -gGAUGGcCAGGGCGUCCGCGgCGUCa -3' miRNA: 3'- uaCUGCCcGUCCCGCGGGUGCgGCGG- -5' |
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18283 | 3' | -65.2 | NC_004681.1 | + | 39353 | 0.76 | 0.060614 |
Target: 5'- uUGACGcGGCGGcccuuGGCGCCCuuGCCGCg -3' miRNA: 3'- uACUGC-CCGUC-----CCGCGGGugCGGCGg -5' |
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18283 | 3' | -65.2 | NC_004681.1 | + | 45365 | 0.78 | 0.040492 |
Target: 5'- --cACGGGCGGGGCGUCCgguGCUGCCa -3' miRNA: 3'- uacUGCCCGUCCCGCGGGug-CGGCGG- -5' |
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18283 | 3' | -65.2 | NC_004681.1 | + | 56819 | 0.66 | 0.335247 |
Target: 5'- -gGAUGGGCugaccaucGGGUGUCCAgccgaugagcuCGCCGUa -3' miRNA: 3'- uaCUGCCCGu-------CCCGCGGGU-----------GCGGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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