miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18283 5' -53.6 NC_004681.1 + 47919 0.66 0.881809
Target:  5'- gGGGCACGc-GGUGACgAGCAUCCa-- -3'
miRNA:   3'- aCUCGUGCucUCACUG-UUGUGGGcag -5'
18283 5' -53.6 NC_004681.1 + 61305 0.66 0.881809
Target:  5'- cGAGaccaAgGAGGGcGACaAGCGCaCCGUCa -3'
miRNA:   3'- aCUCg---UgCUCUCaCUG-UUGUG-GGCAG- -5'
18283 5' -53.6 NC_004681.1 + 46880 0.66 0.881059
Target:  5'- cGGcGCGCGGGAugaccGUGACGccgugcgcgcgcaGCGCCgGUCc -3'
miRNA:   3'- aCU-CGUGCUCU-----CACUGU-------------UGUGGgCAG- -5'
18283 5' -53.6 NC_004681.1 + 18792 0.66 0.866315
Target:  5'- cGAuGUugACGAGAGguccaGGCGGCuGCCCGUUg -3'
miRNA:   3'- aCU-CG--UGCUCUCa----CUGUUG-UGGGCAG- -5'
18283 5' -53.6 NC_004681.1 + 27306 0.66 0.866315
Target:  5'- gGGGCGCGAcgccGGUGuACuuCGCCCGg- -3'
miRNA:   3'- aCUCGUGCUc---UCAC-UGuuGUGGGCag -5'
18283 5' -53.6 NC_004681.1 + 12432 0.66 0.866315
Target:  5'- cGAGgACGGcGaAGUGACGAUcaCCGUCg -3'
miRNA:   3'- aCUCgUGCU-C-UCACUGUUGugGGCAG- -5'
18283 5' -53.6 NC_004681.1 + 31616 0.66 0.858204
Target:  5'- --uGgACGAGGGUGuaauCGACACCUGg- -3'
miRNA:   3'- acuCgUGCUCUCACu---GUUGUGGGCag -5'
18283 5' -53.6 NC_004681.1 + 68178 0.66 0.858204
Target:  5'- aUGAGCGCGAauucccaaGAGgGGCAccacuucuuGCGCCCaUCg -3'
miRNA:   3'- -ACUCGUGCU--------CUCaCUGU---------UGUGGGcAG- -5'
18283 5' -53.6 NC_004681.1 + 40088 0.67 0.804939
Target:  5'- -aGGCugGAGAucauguGUGACuGCACCCcggggGUCg -3'
miRNA:   3'- acUCGugCUCU------CACUGuUGUGGG-----CAG- -5'
18283 5' -53.6 NC_004681.1 + 5534 0.67 0.803991
Target:  5'- aGAGCGguaccccCGAGaAGcUGAUGccgauGCACCCGUCa -3'
miRNA:   3'- aCUCGU-------GCUC-UC-ACUGU-----UGUGGGCAG- -5'
18283 5' -53.6 NC_004681.1 + 14733 0.68 0.775768
Target:  5'- -cGGCAUacGGGUGGCGACcuugaugcgcucACCCGUCg -3'
miRNA:   3'- acUCGUGcuCUCACUGUUG------------UGGGCAG- -5'
18283 5' -53.6 NC_004681.1 + 736 0.68 0.765737
Target:  5'- cGAGgACGAcuGGUGACGGCcuACCCGg- -3'
miRNA:   3'- aCUCgUGCUc-UCACUGUUG--UGGGCag -5'
18283 5' -53.6 NC_004681.1 + 13824 0.68 0.75557
Target:  5'- cGuGUACGGGGGacugGACGAUAagUCCGUCa -3'
miRNA:   3'- aCuCGUGCUCUCa---CUGUUGU--GGGCAG- -5'
18283 5' -53.6 NC_004681.1 + 3288 0.68 0.744245
Target:  5'- cGA-CACGAGgcguguucggcccAGUGAUGACcgACCCGUCa -3'
miRNA:   3'- aCUcGUGCUC-------------UCACUGUUG--UGGGCAG- -5'
18283 5' -53.6 NC_004681.1 + 27705 0.69 0.734876
Target:  5'- -cAGCGCcaccGAGGGUGACccaGGCGCCUGUg -3'
miRNA:   3'- acUCGUG----CUCUCACUG---UUGUGGGCAg -5'
18283 5' -53.6 NC_004681.1 + 48549 0.69 0.703099
Target:  5'- cGAGCGCGAc---GGCAGCACCCa-- -3'
miRNA:   3'- aCUCGUGCUcucaCUGUUGUGGGcag -5'
18283 5' -53.6 NC_004681.1 + 16710 0.7 0.670707
Target:  5'- cGGGUaugACGGGcGGUGGCAGCGauggcaCCGUCa -3'
miRNA:   3'- aCUCG---UGCUC-UCACUGUUGUg-----GGCAG- -5'
18283 5' -53.6 NC_004681.1 + 27808 0.7 0.648916
Target:  5'- aUGGGCGCGGcGgcgccaacGGUGGC-GCAUCCGUCu -3'
miRNA:   3'- -ACUCGUGCU-C--------UCACUGuUGUGGGCAG- -5'
18283 5' -53.6 NC_004681.1 + 48800 0.71 0.572668
Target:  5'- aGGGCGCGGGuGacaucUGAUggUugCCGUCg -3'
miRNA:   3'- aCUCGUGCUCuC-----ACUGuuGugGGCAG- -5'
18283 5' -53.6 NC_004681.1 + 50358 0.72 0.529958
Target:  5'- gUGGGCGCGGGAccagGACAGCGCCUu-- -3'
miRNA:   3'- -ACUCGUGCUCUca--CUGUUGUGGGcag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.