miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18285 3' -56.4 NC_004681.1 + 12321 0.67 0.710157
Target:  5'- aGCCcagAACGGG--CCACCgggGAuGCGGCg -3'
miRNA:   3'- gCGG---UUGCCCaaGGUGGa--CU-UGCCGg -5'
18285 3' -56.4 NC_004681.1 + 12382 0.66 0.78114
Target:  5'- uGCCGA-GGGUUgCCACaggggcgaccucggGAGuCGGCCa -3'
miRNA:   3'- gCGGUUgCCCAA-GGUGga------------CUU-GCCGG- -5'
18285 3' -56.4 NC_004681.1 + 12754 0.67 0.708088
Target:  5'- cCGCCAGCGaGaucagcgaugCCACCUcGGugGGUCg -3'
miRNA:   3'- -GCGGUUGC-Ccaa-------GGUGGA-CUugCCGG- -5'
18285 3' -56.4 NC_004681.1 + 12932 0.66 0.740797
Target:  5'- uGUCAACGGaaaggcCCUGAGCGGCa -3'
miRNA:   3'- gCGGUUGCCcaagguGGACUUGCCGg -5'
18285 3' -56.4 NC_004681.1 + 12987 0.71 0.443334
Target:  5'- aGCCGGugUGGGUguggUCACCcGcAGCGGCCg -3'
miRNA:   3'- gCGGUU--GCCCAa---GGUGGaC-UUGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 14533 0.67 0.730672
Target:  5'- cCGCCucGCGGGcggcguagauUUUCGCCU---CGGCCg -3'
miRNA:   3'- -GCGGu-UGCCC----------AAGGUGGAcuuGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 14895 0.75 0.267221
Target:  5'- gGCCAGCuGGGcgCCAgCCUucaGGAUGGCCa -3'
miRNA:   3'- gCGGUUG-CCCaaGGU-GGA---CUUGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 16030 0.67 0.710157
Target:  5'- gCGCCAGCGa---UgGCCUGGAUGGUCu -3'
miRNA:   3'- -GCGGUUGCccaaGgUGGACUUGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 16184 0.68 0.668355
Target:  5'- gCGCC-GCGGuGgugacgCCACCgaGGGCGGCa -3'
miRNA:   3'- -GCGGuUGCC-Caa----GGUGGa-CUUGCCGg -5'
18285 3' -56.4 NC_004681.1 + 17415 0.68 0.668355
Target:  5'- cCGCCccACGGGUggCGCCaacaugUGGACGGgCa -3'
miRNA:   3'- -GCGGu-UGCCCAagGUGG------ACUUGCCgG- -5'
18285 3' -56.4 NC_004681.1 + 17699 0.66 0.750821
Target:  5'- aCGCCucGACGG--UUCGCCaGucGACGGCCg -3'
miRNA:   3'- -GCGG--UUGCCcaAGGUGGaC--UUGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 18064 0.7 0.501553
Target:  5'- gGCCGcaugggcuGCGGGgcCCACCgGAGCcGCCc -3'
miRNA:   3'- gCGGU--------UGCCCaaGGUGGaCUUGcCGG- -5'
18285 3' -56.4 NC_004681.1 + 18485 0.67 0.730672
Target:  5'- uGCCGccGCGGccgCCGCCUGGcCuGCCa -3'
miRNA:   3'- gCGGU--UGCCcaaGGUGGACUuGcCGG- -5'
18285 3' -56.4 NC_004681.1 + 18505 0.67 0.729654
Target:  5'- gCGCCGA-GGGUcucauggagaccuUCCugCUGAACGaCUc -3'
miRNA:   3'- -GCGGUUgCCCA-------------AGGugGACUUGCcGG- -5'
18285 3' -56.4 NC_004681.1 + 18680 0.68 0.626045
Target:  5'- gGgCAACGGGcagCCGCCUGGACcucucGUCa -3'
miRNA:   3'- gCgGUUGCCCaa-GGUGGACUUGc----CGG- -5'
18285 3' -56.4 NC_004681.1 + 18708 0.65 0.786858
Target:  5'- uGCCAGCGGuGUUCUcccccgcggGCUUGAuguugccgauacccAUGGCg -3'
miRNA:   3'- gCGGUUGCC-CAAGG---------UGGACU--------------UGCCGg -5'
18285 3' -56.4 NC_004681.1 + 18895 0.71 0.443334
Target:  5'- aGCCGGucaGGuGUUCUACCUGGcCGGUCc -3'
miRNA:   3'- gCGGUUg--CC-CAAGGUGGACUuGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 19257 0.66 0.750821
Target:  5'- gCGCCA---GGUcUUCACCUGGaccGCGGUCa -3'
miRNA:   3'- -GCGGUugcCCA-AGGUGGACU---UGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 19780 0.68 0.657801
Target:  5'- aCGCUggUGugcGGcUCCGCUaaGAACGGCCg -3'
miRNA:   3'- -GCGGuuGC---CCaAGGUGGa-CUUGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 20660 0.67 0.730672
Target:  5'- cCGCCAGCGccg-CCAUUUGuGCGGCg -3'
miRNA:   3'- -GCGGUUGCccaaGGUGGACuUGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.